Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30201
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    26   0.31 
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    26   0.31 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.96 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.96 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   2.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.0  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 224 ANVGEYNDRLTGETEKTTPATMSAGDSSL 310
           A + E  DR TG+T +  P ++ +GD+++
Sbjct: 373 AEIKEKCDRRTGKTTEENPKSIKSGDAAI 401


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 224 ANVGEYNDRLTGETEKTTPATMSAGDSSL 310
           A + E  DR TG+T +  P ++ +GD+++
Sbjct: 84  AEIKEKCDRRTGKTTEENPKSIKSGDAAI 112


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -3

Query: 362 ISYSVFSILNITLLFSQREMSRQLTWWL 279
           ++ SVF+++   LL   +EMS ++ +W+
Sbjct: 323 LALSVFALILTALLRKMQEMSIEVPYWI 350


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 224 ANVGEYNDRLTGETEKTTPATMSAGDSSL 310
           A++ E  DR  G+T +  P ++ +GD+++
Sbjct: 373 ADIKEKCDRRNGKTTEENPKSIKSGDAAI 401


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 161 MSWNSLGK*SSTMSLWPSCHSLY 93
           +S NSLG  S +     SCHS Y
Sbjct: 212 ISSNSLGSRSRSFQRTSSCHSRY 234


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 94  YKLWHEGHK-DIVEDYFPSEFQLITRPTDN*AHRQTL 201
           YK W+   +  I ED   S+F L+  PT N +   TL
Sbjct: 160 YK-WNSARQVAIAEDMKLSQFDLVANPTANYSASTTL 195


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 512 GQGLKLDANVDSY 550
           GQ   ++AN+DSY
Sbjct: 61  GQAWNIEANIDSY 73


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 512 GQGLKLDANVDSY 550
           GQ   ++AN+DSY
Sbjct: 61  GQAWNIEANIDSY 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,863
Number of Sequences: 438
Number of extensions: 5065
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)