Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30201
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g15640.1 68415.m01791 F-box family protein contains Pfam PF00... 32 0.45
At1g30760.1 68414.m03761 FAD-binding domain-containing protein s... 30 1.4
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 29 3.1
At1g76070.1 68414.m08834 expressed protein 29 3.1
At4g35840.1 68417.m05091 zinc finger (C3HC4-type RING finger) fa... 29 4.1
At3g10880.1 68416.m01310 hypothetical protein 29 4.1
At2g17310.1 68415.m02000 F-box family protein contains F-box dom... 29 4.1
At5g13590.1 68418.m01572 expressed protein 28 5.5
At4g18770.1 68417.m02773 myb family transcription factor (MYB98)... 28 5.5
At5g21482.1 68418.m02536 cytokinin oxidase, putative (CKX5) cont... 28 7.2
At1g28300.1 68414.m03473 transcriptional factor B3 family protei... 28 7.2
At4g19230.2 68417.m02837 cytochrome P450 family protein cytochro... 27 9.6
At4g19230.1 68417.m02836 cytochrome P450 family protein cytochro... 27 9.6
At3g23510.1 68416.m02960 cyclopropane fatty acid synthase, putat... 27 9.6
At1g74650.1 68414.m08645 myb family transcription factor (cY13) ... 27 9.6
>At2g15640.1 68415.m01791 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 426
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/73 (23%), Positives = 32/73 (43%)
Frame = +1
Query: 313 WENNNVIFKILNTEYEMYLKLDVNVDSYGDRKTWGSNGSSEKRHTWSLYPVKVGNQQLFL 492
WE++ I+K+ ++ + Y++ ++N D + + W K+ WS Y F
Sbjct: 278 WEDDVDIYKLYYSDVDEYVEYNINDDDINELRVWVL--EDVKKQQWSKY-AYTWTDDRFF 334
Query: 493 HREPGDRAGTEAG 531
R GT +G
Sbjct: 335 RRRVSIAGGTASG 347
>At1g30760.1 68414.m03761 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 534
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +1
Query: 232 WRVQRPPNWGDGKDYTSHHVSWRLISLWENNNVIFKILNTEYEMYLKLDVNVDSYG-DRK 408
+++Q W DGK + H+ W + K + Y Y LD+ ++ G D +
Sbjct: 437 FKIQWLTLWQDGKTSEAKHMGWMREMYSYMEQYVSKSPRSAYVNYRDLDLGMNGKGSDAR 496
Query: 409 TWGS 420
WG+
Sbjct: 497 EWGN 500
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -2
Query: 669 PTSPSGIQKGCKLTTAGIMKP*YPGLSATVPLLPKTRPSPYESTFASSFSPCPVS 505
P+ PS + K + T + KP VP P +PSP +T SP P +
Sbjct: 419 PSKPSPVHKPTPVPTTPVHKP------TPVPTTPVQKPSPVPTTPVQKPSPVPTT 467
>At1g76070.1 68414.m08834 expressed protein
Length = 272
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 147 AREVIFDDVLVALVPQLVRERHGVLDALRDEPRDDVATDVGAL 19
A ++ F +V LVP R R DA+ DEP + +G +
Sbjct: 52 ANKMFFSGPMVPLVPNAARVRRNKSDAVWDEPTSPKVSCIGQI 94
>At4g35840.1 68417.m05091 zinc finger (C3HC4-type RING finger)
family protein contains a TG non-consensus donor splice
site at exon 2; contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 186 SLIICWSSDELEFAREVIFDDVLVALVP-QLVRERHG 79
S ++ W S+E F + DV+V+L+ +LVRER G
Sbjct: 94 SSLVLWKSNESRFGCLLYLIDVIVSLISGRLVRERIG 130
>At3g10880.1 68416.m01310 hypothetical protein
Length = 278
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +2
Query: 80 PCRSRTSCGTRATRTSSK---ITSRANSNSSLDQQIIKLIGKHYNQALKLDANV 232
PC TS G +T K + S S SSL+ Q++ +Q+LKL+ V
Sbjct: 39 PCSLVTSMGALSTFKPDKSPDLESGGTSYSSLNHQVVSTTSSEKSQSLKLNDEV 92
>At2g17310.1 68415.m02000 F-box family protein contains F-box domain
Pfam:PF00646
Length = 370
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 499 LDEGTAVDFPPLPGIKTRCVSSHWNRSIPRSSCRRNY-PRSRP 374
L+E PP+ ++ R VS HWN + N+ RSRP
Sbjct: 7 LEEDILSRLPPISLVRFRTVSKHWNSLFNDKTFINNHLSRSRP 49
>At5g13590.1 68418.m01572 expressed protein
Length = 1190
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = +1
Query: 463 VKVGNQQLFLHREPGDRAGTEAGRERGLIRGRPCFGEQRDSCRQPRVLRLHNSSRGQFTP 642
V+ N F HR G R RG +RGR +G +S R+P +H + G
Sbjct: 1008 VRRHNSPPFSHRPSNAGRGRGYARGRGYVRGRG-YGRDGNSFRKPSDHVVHR-NHGNMNN 1065
Query: 643 FLDPR 657
LDPR
Sbjct: 1066 -LDPR 1069
>At4g18770.1 68417.m02773 myb family transcription factor (MYB98)
identical to transcription factor (MYB98) GI:15375282
from [Arabidopsis thaliana]
Length = 427
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Frame = -1
Query: 466 LPGIKTRCVSSHWN----RSIPRSSCRRNYPR 383
LPG + +HWN R + CR YPR
Sbjct: 298 LPGRTENSIKNHWNATKRRQFSKRKCRSKYPR 329
>At5g21482.1 68418.m02536 cytokinin oxidase, putative (CKX5)
contains Pfam profile: PF01565 FAD binding domain;
identical to cytokinin oxidase (CKX5) [Arabidopsis
thaliana] gi|11120514|gb|AAG30908; similar to
Swiss-Prot:Q9LTS3 cytokinin oxidase 3 precursor (CKO
3)[Arabidopsis thaliana]
Length = 524
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +2
Query: 80 PCRSRTSCGTRATRTSSKITSR-ANSNSSLDQQIIKLIGK-HYNQALKLDANV 232
P R SCG+ + R ++SNS++D+++ +LIG+ +N+ L+ + ++
Sbjct: 302 PTRLPQSCGSVLYCLELGLHYRDSDSNSTIDKRVERLIGRLRFNEGLRFEVDL 354
>At1g28300.1 68414.m03473 transcriptional factor B3 family protein /
leafy cotyledon 2 (LEC2) nearly identical to LEAFY
COTYLEDON 2 [Arabidopsis thaliana] GI:15987516; contains
Pfam profile PF02362: B3 DNA binding domain
Length = 363
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 520 TEAGRERGLIRGRPCFGEQRDSCRQPRVLRLHNSSR 627
T+ G E G + G PC ++R PR+ ++ +R
Sbjct: 77 TQTGSEFGSLVGNPCLWQERGGFLDPRMTKMARINR 112
>At4g19230.2 68417.m02837 cytochrome P450 family protein cytochrome
P450, Arabidopsis thaliana; supported by cDNA:
gi_15293092_gb_AY050980.1_
Length = 484
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 268 KDYTSHHVSWRLISLWENNNVIFKILNTEYEMYLKLDVNVDSYGDRKTWG 417
+D T+ +SW L L EN NV+ + TE +M ++ D G+ TWG
Sbjct: 277 RDTTASVMSWILKYLAENPNVLEAV--TEEQMAIRKD---KEEGESLTWG 321
>At4g19230.1 68417.m02836 cytochrome P450 family protein cytochrome
P450, Arabidopsis thaliana; supported by cDNA:
gi_15293092_gb_AY050980.1_
Length = 467
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 268 KDYTSHHVSWRLISLWENNNVIFKILNTEYEMYLKLDVNVDSYGDRKTWG 417
+D T+ +SW L L EN NV+ + TE +M ++ D G+ TWG
Sbjct: 277 RDTTASVMSWILKYLAENPNVLEAV--TEEQMAIRKD---KEEGESLTWG 321
>At3g23510.1 68416.m02960 cyclopropane fatty acid synthase, putative
/ CPA-FA synthase, putative similar to cyclopropane
synthase [Sterculia foetida] GI:21069167; contains Pfam
profile PF02353: Cyclopropane-fatty-acyl-phospholipid
synthase
Length = 867
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 128 SKITSRANSNSSLDQQIIKLIGKHYNQALKL 220
+K+TS +S+S L + ++ IG HY Q L+L
Sbjct: 766 AKVTSAMSSSSRLCIEHVENIGIHYYQTLRL 796
>At1g74650.1 68414.m08645 myb family transcription factor (cY13)
similar to myb protein cY13 GI:928930 from [Arabidopsis
thaliana]; contains Pfam profile: PF00249 myb
DNA-binding domain; identical to cDNA cY13 gene
GI:928929
Length = 330
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 153 PTHHSTNR*LSSSANITIKLSNW 221
P HHST SS+ NI+ L NW
Sbjct: 196 PHHHSTTTYASSTDNISKLLQNW 218
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,114,494
Number of Sequences: 28952
Number of extensions: 353197
Number of successful extensions: 1097
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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