Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30200
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    28   1.1  
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.5  
SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|c...    26   4.5  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    26   5.9  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  

>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = -1

Query: 522 GFKNNAFYPVMTSSNLSIKSIVCYFVSKFKIMKRVLESNIKHLSS--KLLSFLTDFVFIC 349
           G + N  + ++   + ++     + +SK  ++   +    K  S+  + L FLT   F  
Sbjct: 291 GSRYNTLHNLLADGDFTLFHFTLFLLSKIILLNLKISDYEKAFSTLQQALLFLTSSFFN- 349

Query: 348 *EHSYNFGKIVKNINTDCYTVFIDRI 271
            E   N  +I+   N DCYT+   +I
Sbjct: 350 -EFVQNNLEIIAAFNYDCYTLLFKKI 374


>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 646 RQLKASFHKLWPSLF*RTRGHLSLRSL 566
           ++ K+  H+LW S++ RT G L L  L
Sbjct: 54  KKKKSEQHELWASVYNRTIGKLQLNKL 80


>SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = -1

Query: 336 YNFGKIVKNINTDCY----TVFIDRIFFWPY 256
           YNFG +++  NTD Y    T+F+ R+ F  Y
Sbjct: 101 YNFGTLLRIKNTDEYEQETTIFVPRMQFLAY 131


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 188 QIISSGVNVELTNDSVTESK 247
           Q IS+ +N+E TNDS+ E+K
Sbjct: 93  QNISTTLNLEKTNDSIKETK 112


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 429 MKRVLESNIKHLSSKLLSFLTD 364
           +K +L  +  HL+ ++LSFLTD
Sbjct: 284 IKNILNDDELHLTEEVLSFLTD 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,773
Number of Sequences: 5004
Number of extensions: 51865
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)