Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30200
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604...    30   2.0  
02_01_0597 - 4433105-4433467,4433671-4433860,4434569-4434786,443...    30   2.0  
12_01_1052 + 10821964-10822064,10822434-10822607,10823086-108233...    29   3.5  

>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
            22061666-22061867,22062273-22062344,22062509-22062573,
            22062682-22062741,22063033-22064379,22064463-22064607,
            22064688-22067442,22068540-22068630,22068655-22068873
          Length = 2105

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 364  FCFHLLGAFIQFWEDSEK 311
            FCFHL GA   F ED+EK
Sbjct: 1626 FCFHLAGALPDFSEDNEK 1643


>02_01_0597 -
           4433105-4433467,4433671-4433860,4434569-4434786,
           4434882-4436556,4437137-4438113
          Length = 1140

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
 Frame = -1

Query: 591 EDIYP*DLCSNQLVSQLVWVSTTGFKNNAFYPVMTSSNLSIKSIVCYFVSKFKIMKRVLE 412
           +D  P D+ S+  +  LV   TT   +      +  S+++   + C  + + ++ +R L+
Sbjct: 127 QDSPPLDVSSDPALKALVSYETTFRYHFQVGNAVYQSSVAKHEVCCRLLREGQVQERALD 186

Query: 411 ---SNIKHLSSKLLSFLTDFVFIC*EHSYNFGKIVKNINTD 298
              SN++H + KL    +DFV    +      +++ N   D
Sbjct: 187 TARSNLEHTARKLTQRYSDFVKCFSQQHRGHAEMLANFERD 227


>12_01_1052 +
           10821964-10822064,10822434-10822607,10823086-10823346,
           10829833-10831798,10832114-10832515
          Length = 967

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = -1

Query: 591 EDIYP*DLCSNQLVSQLVWVSTTGFKNNAFYPVMTSSNLSIKSIVCYFVSKFKIMKRVLE 412
           +D YP D    QL    + +  +  KNN F    T     I  IV    SK  + K+   
Sbjct: 487 KDYYPKDYKQMQLTGMQILLKLSYDKNNLFLMSNTDDPALINKIVALITSKGSLHKKQHN 546

Query: 411 --SNIKHLSSKLLSFLTDFVF 355
             S +  L  K+LS    F++
Sbjct: 547 EWSCMAELGVKILSRFMRFMY 567


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,492,756
Number of Sequences: 37544
Number of extensions: 270446
Number of successful extensions: 398
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)