Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30200
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47068-6|CAA87334.2|  272|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF478687-1|AAL78657.1|  776|Caenorhabditis elegans systemic RNAi...    29   3.2  
AF101305-9|AAF98593.3|  776|Caenorhabditis elegans Systemic rna ...    29   3.2  
AF039710-4|AAD32273.1|  347|Caenorhabditis elegans Serpentine re...    29   3.2  
L25599-4|ABA54417.1|  145|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z54342-3|CAA91154.1|  394|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z47068-6|CAA87334.2|  272|Caenorhabditis elegans Hypothetical
           protein F15G9.5 protein.
          Length = 272

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 134 ELDNYCVLCCGNI*HK 181
           E DNYC LCCGN  H+
Sbjct: 73  EEDNYCYLCCGNSEHQ 88


>AF478687-1|AAL78657.1|  776|Caenorhabditis elegans systemic RNAi
           enabling proteinSID-1 protein.
          Length = 776

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -1

Query: 498 PVMTSSNLSIKSIVCYFVSKFKIMKRVLESNIKHLSSKLL--SFLTDFVFIC*E 343
           P++TSSN S+  +V    SK K++++ LE+N  H+    L  SF+ D   +  E
Sbjct: 26  PIITSSNSSV--LVFEISSKMKMIEKKLEANTVHVLRLELDQSFILDLTKVAAE 77


>AF101305-9|AAF98593.3|  776|Caenorhabditis elegans Systemic rna
           interference defectiveprotein 1 protein.
          Length = 776

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -1

Query: 498 PVMTSSNLSIKSIVCYFVSKFKIMKRVLESNIKHLSSKLL--SFLTDFVFIC*E 343
           P++TSSN S+  +V    SK K++++ LE+N  H+    L  SF+ D   +  E
Sbjct: 26  PIITSSNSSV--LVFEISSKMKMIEKKLEANTVHVLRLELDQSFILDLTKVAAE 77


>AF039710-4|AAD32273.1|  347|Caenorhabditis elegans Serpentine
           receptor, class h protein99 protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = -1

Query: 444 SKFKIMKRVLESNIKHLSSKLLSFLTDFVFIC*EHSYNFGKIVKNINTDCYTVFIDRIFF 265
           ++FK+ K+   S IK+ S  LLS+ T F+F+    +     I++ +    Y       F 
Sbjct: 140 NRFKMSKK--SSRIKYYSLILLSYTTIFIFLTIIPTDQETAILQAL--QAYPCPTQEFFT 195

Query: 264 WPYIFI-LDSVTESFVSSTLTPLEIIC 187
           +P + +  DS T  F+ +   P+  IC
Sbjct: 196 FPILILNSDSTTSMFIIAIFMPI-FIC 221


>L25599-4|ABA54417.1|  145|Caenorhabditis elegans Hypothetical
           protein F54H12.7 protein.
          Length = 145

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 537 WVSTTGFKNNAFYPVMTSSNLSIKSIVCYFVSK 439
           W S TGF +N  YP++  S++ +  ++ YF+ K
Sbjct: 99  WESITGFIDNYKYPII--SSVVLAGVLTYFIVK 129


>Z54342-3|CAA91154.1|  394|Caenorhabditis elegans Hypothetical
           protein C08H9.6 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 447 VSKFKIMKRVLESNIKHLSSKLLSFLTDFVF 355
           ++ FK  KRV+  + K LS+  L  LT F+F
Sbjct: 45  MANFKCQKRVVAYSAKFLSNHQLKKLTHFIF 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,364,607
Number of Sequences: 27780
Number of extensions: 278743
Number of successful extensions: 493
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)