Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30198
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    65   7e-12
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    27   1.2  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.6  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   2.2  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    27   2.2  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   2.9  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.8  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    26   3.8  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   5.0  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    25   5.0  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    25   6.7  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   6.7  

>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 64.9 bits (151), Expect = 7e-12
 Identities = 27/53 (50%), Positives = 38/53 (71%)
 Frame = +3

Query: 96  VKRALRLLKPGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSII 254
           +K A R +KPG  N+ VT+ + KI+  YGCKP+ GMLSHQ ++  IDG+K +I
Sbjct: 152 LKAAQRTIKPGNTNWQVTDIVDKIATSYGCKPVAGMLSHQQEREVIDGKKQVI 204



 Score = 25.8 bits (54), Expect = 3.8
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +2

Query: 239 REEYYKNPSEAQRKEHEKATL*KV*KCMPMGCSKYPLVKAVGRENGPPRCTNIPKKLMRV 418
           +++   NPS++QR E +  T  +       G          G+       T I KK    
Sbjct: 200 KKQVILNPSDSQRSEMDTFTFEEG---EVYGVDILVSTSPSGKVKRSDIATRIYKKTDTT 256

Query: 419 YQLKLKASRNV 451
           Y LKL+ASR V
Sbjct: 257 YMLKLQASRKV 267


>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -2

Query: 476 MFVTNLTIEHFWKPLVSIGTPSSVFWVYWYIWVVHFHVQLLSPVDIWNI 330
           M    L+     + L  IG   S F   WY+ V H  V   + + IW++
Sbjct: 290 MLKHELSFTQSGRHLAEIGAEPSAFATRWYLTVFHQCVPFHTQLRIWDL 338


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 370  KWTTQMYQYTQKTDEGVPIETKGFQKCSIVR 462
            KW  Q+ QYT ++ E  P+    F    IV+
Sbjct: 1403 KWNPQLLQYTMRSMESYPVSVTFFYVPQIVQ 1433


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 409 QFFGYIGTSGWSIFTSNCFHQWIFGTSHWHTLS 311
           ++  + G S W + T +   ++IF TSH H L+
Sbjct: 322 RYLSFDGESSWGLTTYSLASKYIFNTSH-HNLT 353


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 8/46 (17%), Positives = 24/46 (52%)
 Frame = -2

Query: 383 WVVHFHVQLLSPVDIWNIPLAYTFILFKVWLFHVLYAVLLMDFYNT 246
           W++ F + ++ P+ ++     ++ + F+ W+  ++   L+   Y T
Sbjct: 562 WIIFFILVIIVPLPMYGSKYIFSKLFFRGWIIVIIIWTLIAALYIT 607


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 383 WVVHFHVQLLSPVDIWNIPLAYTFILFKVWLFHVL 279
           ++VH+    L PVD   I + Y F+  K+ L HV+
Sbjct: 144 FLVHYGHSCLIPVDQTPIKVLYVFVDIKIDLQHVV 178


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 468 YEPHYRTFLEAFSFNWYTLISFLGILV 388
           YE H + F     F WY++IS +   V
Sbjct: 560 YEQHLQVFFMGNPFVWYSVISLVAFFV 586


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 289 FMFFTLCF*WIFIILFSPS 233
           F F T+CF WI I    PS
Sbjct: 328 FFFVTICFTWISISCLKPS 346


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 430 FQLVHPHQFFGYIGTSGWSIFTSNCFH 350
           F LVHP   +   G+S W   ++  FH
Sbjct: 256 FLLVHPEDIYCISGSSDWVCVSTQHFH 282


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -1

Query: 414 LISFLGILVHLGGPFSRPTAFTSGYLEHPIGIHFHTFQSVAFSCSLRCASD 262
           L+SFLG++V+L G      AF  G+  H  G H H   S    C     +D
Sbjct: 455 LVSFLGLVVNLVGIL----AFNHGH-NHDHGSHHHHSHSNHSMCLPNTTND 500


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +3

Query: 219 KQFRIDGEKSIIKIHQKHSVKNMKKPHFEKYESVCQWDVPNIHW*KQLDVKMDHPDVPI 395
           KQ  ++ +K   +I  K  +KN K+    + + + +  V N+H  + +  K D P + I
Sbjct: 198 KQKSLEEQKIAPEIPVKQQIKNDKEALGIQAQQLLEEPVENLHLIRNIFEKFDSPYITI 256


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 279 KNMKKPHFEKYESVCQWDVPNIHW 350
           +N  KP+      VC WD P + W
Sbjct: 297 ENDVKPYLSPDTRVCVWDRPGMGW 320


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 437 PLVSIGTPSSVFWVYWYIWVVHFHVQLLSP 348
           P  S G   +V++ Y   W +H H  LL P
Sbjct: 89  PARSAGILQNVYFKYLISWEIHDHWHLLLP 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,540
Number of Sequences: 5004
Number of extensions: 53981
Number of successful extensions: 172
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)