Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30198
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185...    73   1e-13
01_06_0492 - 29769252-29769330,29769432-29769508,29769604-297697...    33   0.13 
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743...    28   3.8  
04_04_0670 - 27128153-27129075,27129152-27129266,27129348-271295...    27   6.7  
11_03_0007 + 8892616-8892760,8893073-8893206,8893496-8893695,889...    27   8.8  
11_02_0076 - 8059267-8059387,8059406-8059857                           27   8.8  
07_01_0084 + 657846-658538,660652-661920                               27   8.8  
06_03_0100 + 16643876-16643947,16644846-16644924,16645699-16646177     27   8.8  

>05_03_0633 +
           16416913-16417009,16417976-16418060,16418398-16418551,
           16418808-16419023,16419105-16419241,16419317-16419408,
           16419622-16419804,16421722-16421819,16422021-16422070,
           16424605-16424756,16424944-16425069,16426315-16426523
          Length = 532

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 32/52 (61%), Positives = 42/52 (80%)
 Frame = +3

Query: 105 ALRLLKPGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSIIKI 260
           ALRL++PG +N  VTEAIQK++A Y CK +EG+LSHQLKQF IDG K ++ +
Sbjct: 103 ALRLVRPGKKNKDVTEAIQKVAAAYDCKIVEGVLSHQLKQFVIDGNKVVLSV 154



 Score = 37.5 bits (83), Expect = 0.006
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +2

Query: 2   GFIAVVAHTVVVGESEVSGRAADVL 76
           GFIAVVAHT V+ +  V+G+AADVL
Sbjct: 69  GFIAVVAHTHVIHDGAVTGKAADVL 93


>01_06_0492 -
           29769252-29769330,29769432-29769508,29769604-29769761,
           29769879-29769964,29770058-29770085,29771223-29771730
          Length = 311

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -1

Query: 432 SFNWYTLISFLGILVHLGGPFSRPTAFTSGYLEHPIGIHFHTFQSVAFSCSLRCASDGFL 253
           S  WYTL+ FL  L    G  +  ++ T+G +   +G  +H    +  S S+R  SDG L
Sbjct: 141 SLIWYTLLLFLFELRAANGMATTTSSETTGLIWALVGFRWHIRLPLIVSNSIRMLSDGGL 200


>10_08_0573 +
           18872720-18872781,18873261-18873610,18873917-18874334,
           18875172-18877180,18877390-18877398,18880291-18880398,
           18880399-18880469,18880769-18881785
          Length = 1347

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 216 LKQFRIDGEKSIIKIHQKHSV--KNMKKPHFEKYESVCQWD 332
           L+   I G  +++K     S   + +KK HFE+ +S+ QWD
Sbjct: 723 LENLHIKGWDALVKFCGSSSANFQALKKLHFERMDSLKQWD 763


>04_04_0670 -
           27128153-27129075,27129152-27129266,27129348-27129537,
           27129652-27129786,27129874-27129971,27131075-27131764
          Length = 716

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = -3

Query: 340 FGTSHWHTLSYFSKCGFFMFFTLCF*WIFIILFSPSIRNC-FSWCESIPSIGLQPYSALI 164
           F T H   ++     GF  +F + F W F   F     NC FS     P+ GL+ +    
Sbjct: 253 FHTPHGDAMAKQQVNGFTKYFAMSFFWSFFQWFYSGGDNCGFS---QFPTFGLKAWQQTF 309

Query: 163 F*MASVT 143
           F   S+T
Sbjct: 310 FFDFSLT 316


>11_03_0007 +
           8892616-8892760,8893073-8893206,8893496-8893695,
           8893809-8894090,8894185-8894243,8894345-8894381,
           8894501-8894723,8894818-8894964,8895845-8895892
          Length = 424

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 464 NLTIEHFWKPLVSIGTPSSVFWVYWYIWVVHFHVQLL 354
           N+T +H+W   +  G P  V    W I  + F   LL
Sbjct: 85  NITNKHYWSSTIFTGRPGYVIAALWLIGGIIFVGALL 121


>11_02_0076 - 8059267-8059387,8059406-8059857
          Length = 190

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 355 FHQWIFGTSHWHTLSYFSKCGFF 287
           FHQW FG S  H  S + +  FF
Sbjct: 38  FHQWDFGLSALHDRSSYDRRRFF 60


>07_01_0084 + 657846-658538,660652-661920
          Length = 653

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 369 KMDHPDVPIYPK 404
           + DHPDVP+YP+
Sbjct: 529 RKDHPDVPVYPQ 540


>06_03_0100 + 16643876-16643947,16644846-16644924,16645699-16646177
          Length = 209

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -2

Query: 188 LTTIFSTYFLNGFSDCIVLSTRLQETKSPLH*HDELPTKHLQHVQRLHFHPQLLYELQQL 9
           L  +F   FLN + DC+ +      +++ +  HD LP  H  H    H  P       QL
Sbjct: 80  LHRLFGVLFLNDYRDCVTVFVSSAFSRTLV--HDALPCVH-DHSTAPHARPAARLPRHQL 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,562,014
Number of Sequences: 37544
Number of extensions: 313063
Number of successful extensions: 837
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)