Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30198
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)               79   3e-15
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)                     33   0.10 
SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)                   32   0.32 
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)                  31   0.42 
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_26743| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.97 
SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.7  
SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_30955| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_50591| Best HMM Match : DUF1045 (HMM E-Value=9.2)                   27   9.1  
SB_10935| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13)                   27   9.1  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
          Length = 465

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 51/132 (38%), Positives = 70/132 (53%)
 Frame = +3

Query: 105 ALRLLKPGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSIIKIHQKHSVKN 284
           A R++KPG EN  VTE +QK++  + CKPIEGMLSHQLK+  IDGEK+II+   +   K+
Sbjct: 157 AQRMVKPGAENSTVTELVQKVAESFKCKPIEGMLSHQLKRNVIDGEKAIIQNPNEQQRKD 216

Query: 285 MKKPHFEKYESVCQWDVPNIHW*KQLDVKMDHPDVPIYPKN**GCTN*N*RLPEMFYSEV 464
             K  F  +E    + V  +        K       +Y K      N   +   +F+S+V
Sbjct: 217 HSKCEFAVHE---VYGVDVLVSTGDGKTKEKDTRTTVY-KRTGNIYNLKMKASRVFFSDV 272

Query: 465 RNKHGNMPFNLR 500
            NK   MPF LR
Sbjct: 273 CNKFTMMPFTLR 284



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 19/29 (65%), Positives = 24/29 (82%), Gaps = 3/29 (10%)
 Frame = +2

Query: 2   GFIAVVAHTVVVG---ESEVSGRAADVLL 79
           GFIAV+ HT+VVG   E++V+GR ADVLL
Sbjct: 120 GFIAVIGHTIVVGCSKENKVTGRKADVLL 148


>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
          Length = 1222

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +3

Query: 93  LVKRALRLLKPGTENYAVTEAIQKISAEYGCK-PIEGML-SHQLKQFRIDGEKSIIKIHQ 266
           L ++ LRLL+  +  + V++ I+   A+YG K  +E  L   Q  + R + EK    IH+
Sbjct: 237 LTEKDLRLLENDSYEFLVSDLIRIARAKYGNKEALEDRLQDRQRVKTRREAEKQCALIHR 296

Query: 267 KHSVKNMKKPHFEKYESVCQWDVPNIH 347
           +  V    +     YE +   D   +H
Sbjct: 297 EQEVIRALEHMNSSYEDIASVDARLVH 323


>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2630

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -1

Query: 456  YRTFLEAFSFNWYTLISFLGILVHLGGPFSRPT 358
            YR    AFS   ++L+S +G LVHL  P +RPT
Sbjct: 1392 YRVRFFAFSSPLFSLLSVMGALVHLRLPSARPT 1424


>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
          Length = 516

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 201 MLSHQLKQFRIDGEKSIIKIHQKHSVKNMKKPHFEKYESVCQWDVPNIH 347
           +L  Q K  RI GEK + K+  KH     KK   +K++   +  +P+I+
Sbjct: 139 VLLEQQKSIRIKGEKHLPKLRHKHKKPKPKKEKKKKHKKKHKTKLPDIN 187


>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
          Length = 1205

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
 Frame = +3

Query: 102 RALRLLKPGTENYAVTEAIQKISAEYGC---------KPIEGMLSHQLKQFRIDGEKSII 254
           R + LL  GTE   +   ++K +A+Y C           IE  LSH  K  ++ G K II
Sbjct: 15  RVVSLLGAGTEEITIESLVEKYTAKYNCGLELWKGEFVKIEAFLSHSCKA-KVTGSKVII 73

Query: 255 KIHQKHSV------KNMKKPHFEKYESVCQWD 332
              +  +V      +   KP F ++    Q D
Sbjct: 74  IKEEPKTVAPTTTMQYFSKPQFSQFFGFVQTD 105


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
 Frame = -2

Query: 287 HVLYAVLLMDFYNTLLSI--NT-ELLQLV*EHTLNWLTTIFSTYFLNGFSDCIVLSTRLQ 117
           H L  V+ ++ +  L+ I  NT +LL ++  +    LT I +T+ L      IV++T  Q
Sbjct: 354 HKLLTVITINTHKLLIVIIINTHKLLTVIIINNHKLLTVIINTHKL-----LIVITTHPQ 408

Query: 116 ETKSPLH*HDELPTK-HLQHVQ---RLHFHPQLLYELQQ 12
            T    H H +L  + H QH Q   R H HPQ+ +   Q
Sbjct: 409 VTHR-YHQHPQLTHRYHHQHPQVIHRYHQHPQVTHRYHQ 446


>SB_26743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 108 LRLLKPGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKS 248
           LR   P  + + VTEAI ++      KPIE    HQ  + +I  + S
Sbjct: 6   LRFFFPSRDCFLVTEAISQLRRPLDRKPIESAKKHQASKKQICAKSS 52


>SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 107 SPLH*HDELPTKHLQHVQRLHFH 39
           SPLH HD +PT    H+ RLH H
Sbjct: 90  SPLHTHDSIPTPTYPHL-RLHTH 111


>SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1029

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 279 KNMKKPHFEKYESVCQWDVP 338
           KN  KP +E YE    WD+P
Sbjct: 381 KNKPKPLYENYEVQAYWDIP 400


>SB_30955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 971

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 361 NCFHQWIFGTSHWHTLSYF--SKCGFFMFFTLCF*WIFIILFSP 236
           N FH  I+G +H+   +YF   +  FF +  +C  W ++ +  P
Sbjct: 315 NMFHGEIYGYTHYLQTTYFLPKEVEFFWYDVVCQYWPWLRMHDP 358


>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2516

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 391  GTSGWSIFTSNCFHQWIFGTSHWHTLSYFSKC 296
            GT GW  ++S  +  WI G   W   SY++ C
Sbjct: 1667 GTFGWVDYSSVAYTNWIAGKPGW---SYWADC 1695


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
 Frame = +3

Query: 81  QLIMLVKRALRLLKPGTEN--YAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSII 254
           Q +   +  +R LK   +N  +  TE  Q  S E     +EG +  + +Q R +      
Sbjct: 406 QQLQAYEHEIRNLKAELKNQKHGFTECKQ--SLESAITVLEGRIKEREEQVRNE------ 457

Query: 255 KIHQKHS--VKNMKKPHFEKYESV 320
            +H++H   ++N+KK HFE+ E++
Sbjct: 458 -LHEEHQYLMENLKKEHFEEVENL 480


>SB_50591| Best HMM Match : DUF1045 (HMM E-Value=9.2)
          Length = 366

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
 Frame = +3

Query: 45  VKSLDVLQMFCWQLIMLVKRALRLLKPGTENYAVTEAIQKISAEYGCKPI--EGMLSHQL 218
           V  LD +Q     L    +  L  L P  E      A +     + C P    G+L H L
Sbjct: 121 VNGLDPMQAELSMLQHFSQNKLMELPPRKERETAERAARANELRHFCAPDVDSGLLEHAL 180

Query: 219 KQFRIDG 239
           KQ+  +G
Sbjct: 181 KQYAFEG 187


>SB_10935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +3

Query: 216 LKQFRIDG-EKSIIKIHQKHSVKNMKKPHFEKYESVCQWDVPNIHW*KQLD--VKMDHPD 386
           ++Q ++D  EK    +  +H +KN KK   E+ ESV +  V    + +Q++  ++  H +
Sbjct: 84  MQQTKLDNLEKLKEDLEIEHELKNQKKEFLERQESVEKQKVYEDAFIEQMNYYIQFGHTE 143

Query: 387 VPI 395
            PI
Sbjct: 144 EPI 146


>SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13)
          Length = 1252

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 325 WHTLSYFSKCGFFMFFTLCF*WIFI 251
           W ++ Y+S    F F TLCF W+F+
Sbjct: 220 WISILYYS---VFTFGTLCFVWVFL 241


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -2

Query: 407 VFWVYWYIWVVHFHVQLLSPVDIWNIPLAYTFILFKVWLFHVLYAVLLMDFYNTLLSINT 228
           V ++Y  IW+  FHV LL  V+         ++   +WLFHV +   +   Y+ +   + 
Sbjct: 114 VIYMYHVIWL--FHVSLLCHVN---------YMYHVIWLFHVSWLCHVNYMYHVIWLFHV 162

Query: 227 ELL 219
            LL
Sbjct: 163 SLL 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,133,091
Number of Sequences: 59808
Number of extensions: 373312
Number of successful extensions: 1161
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)