Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30198
(513 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical ... 76 2e-14
CU457740-5|CAM36335.1| 361|Caenorhabditis elegans Hypothetical ... 32 0.21
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 29 1.5
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 29 1.5
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 29 1.5
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 29 1.5
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 29 1.5
U23518-3|AAC70885.1| 109|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z49127-11|CAA88952.2| 452|Caenorhabditis elegans Hypothetical p... 29 2.6
AL033535-4|CAA22134.2| 452|Caenorhabditis elegans Hypothetical ... 29 2.6
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 3.4
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 3.4
Z49127-6|CAA88947.1| 454|Caenorhabditis elegans Hypothetical pr... 28 4.5
AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical ... 27 6.0
Z81533-5|CAB04337.1| 342|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z67990-6|CAA91937.1| 199|Caenorhabditis elegans Hypothetical pr... 27 7.9
U52000-2|AAK68677.1| 529|Caenorhabditis elegans Vang (van gogh/... 27 7.9
U52000-1|AAA96091.1| 532|Caenorhabditis elegans Vang (van gogh/... 27 7.9
U40424-1|AAA81456.2| 461|Caenorhabditis elegans Twik family of ... 27 7.9
CU457741-17|CAM36359.1| 300|Caenorhabditis elegans Hypothetical... 27 7.9
AF083650-1|AAC32861.1| 461|Caenorhabditis elegans potassium cha... 27 7.9
>AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical
protein W08E12.7 protein.
Length = 391
Score = 75.8 bits (178), Expect = 2e-14
Identities = 49/134 (36%), Positives = 72/134 (53%)
Frame = +3
Query: 105 ALRLLKPGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSIIKIHQKHSVKN 284
A+R L+P TEN +T+ I K +AE+G PIE MLSHQL++ IDGEK II+ +
Sbjct: 164 AIRSLRPDTENTTITKNIDKTAAEFGLTPIENMLSHQLERNEIDGEKKIIQNSGEKQKGE 223
Query: 285 MKKPHFEKYESVCQWDVPNIHW*KQLDVKMDHPDVPIYPKN**GCTN*N*RLPEMFYSEV 464
++K +K+E+ D+ K MD ++ KN + +F+S+V
Sbjct: 224 IEKIKIDKHEAYA-IDI-LFSTGKGQPKDMD-TRTTVFRKNEQVSYQLKMKASRVFFSDV 280
Query: 465 RNKHGNMPFNLRQF 506
HG MPF+LR F
Sbjct: 281 NKVHGPMPFSLRSF 294
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 3/28 (10%)
Frame = +2
Query: 2 GFIAVVAHTVVVG---ESEVSGRAADVL 76
G IA AHTVVVG +++V+G+ AD+L
Sbjct: 127 GLIATAAHTVVVGASKDNKVTGKLADLL 154
>CU457740-5|CAM36335.1| 361|Caenorhabditis elegans Hypothetical
protein C50E10.5 protein.
Length = 361
Score = 32.3 bits (70), Expect = 0.21
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 397 YIGTSGWSIFTSNC-FHQWIFGTSHWHTLSYFSKCGFFMFFTLCF*WIFIIL 245
Y TS W IF + F I HW +F+ FF+ F +CF +FIIL
Sbjct: 160 YERTSRWRIFRALLIFQHGIIFVMHW--FCFFNHINFFLGFIVCF--LFIIL 207
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 501 GAD*RACSHVCYEPHYRTFLEAFSFNWY 418
GAD +C HV Y PH + +++++Y
Sbjct: 233 GADANSCDHVAYMPHPPPSSDCYTYDYY 260
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 501 GAD*RACSHVCYEPHYRTFLEAFSFNWY 418
GAD +C HV Y PH + +++++Y
Sbjct: 233 GADANSCDHVAYMPHPPPSSDCYTYDYY 260
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 29.5 bits (63), Expect = 1.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 501 GAD*RACSHVCYEPHYRTFLEAFSFNWY 418
GAD +C HV Y PH + +++++Y
Sbjct: 233 GADANSCDHVAYMPHPPPSSDCYTYDYY 260
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 409 DEGVPIETKGFQKCSIVRFVTNMGTCPSICA 501
DEG P T F KC FVT+ CP A
Sbjct: 392 DEGAPKLTNKFNKCCHNLFVTDDACCPQAAA 422
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 409 DEGVPIETKGFQKCSIVRFVTNMGTCPSICA 501
DEG P T F KC FVT+ CP A
Sbjct: 414 DEGAPKLTNKFNKCCHNLFVTDDACCPQAAA 444
>U23518-3|AAC70885.1| 109|Caenorhabditis elegans Hypothetical
protein F21D12.5 protein.
Length = 109
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 320 MPMGCSKYPLVKAVGRENGP--PRCTNIPKKLMRVYQ 424
MP+ + VKAVGR P P C KK++R+Y+
Sbjct: 1 MPLPMNSGEKVKAVGRSYNPGRPLCLEDRKKIVRLYE 37
>Z49127-11|CAA88952.2| 452|Caenorhabditis elegans Hypothetical
protein F13D12.9 protein.
Length = 452
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 147 TEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSIIKI 260
T+A K A+YG KP L QF IDG + I K+
Sbjct: 122 TQAAYK--AQYGDKPRTKSFGSHLTQFSIDGVRKIAKV 157
>AL033535-4|CAA22134.2| 452|Caenorhabditis elegans Hypothetical
protein F13D12.9 protein.
Length = 452
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 147 TEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSIIKI 260
T+A K A+YG KP L QF IDG + I K+
Sbjct: 122 TQAAYK--AQYGDKPRTKSFGSHLTQFSIDGVRKIAKV 157
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 161 LNGFSDCIVLSTRLQETKSPLH*HDELPTKHLQHVQRLHFHPQLLYE 21
L G + VL+T+ +SP+ H+++P+ HL+ V H + YE
Sbjct: 2264 LEGHEEKEVLTTQTTIMESPIR-HEDIPSPHLEDVTPKVSHQEHPYE 2309
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 161 LNGFSDCIVLSTRLQETKSPLH*HDELPTKHLQHVQRLHFHPQLLYE 21
L G + VL+T+ +SP+ H+++P+ HL+ V H + YE
Sbjct: 2264 LEGHEEKEVLTTQTTIMESPIR-HEDIPSPHLEDVTPKVSHQEHPYE 2309
>Z49127-6|CAA88947.1| 454|Caenorhabditis elegans Hypothetical
protein F13D12.6 protein.
Length = 454
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 400 GYIGTSGWSIFTSNCFHQWIFGTSHWHTLSYFSKCGFFM 284
G + + W ++C H WH+ S FS CG F+
Sbjct: 219 GVVDQAKWEHMKTSCCHNDT-DACPWHSFSEFSACGEFV 256
>AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical
protein F13C5.2 protein.
Length = 374
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 20 AHTVVVGESEVSGRAAD 70
AH + +GESE++G AAD
Sbjct: 350 AHPIHIGESEIAGHAAD 366
>Z81533-5|CAB04337.1| 342|Caenorhabditis elegans Hypothetical
protein F36G9.8 protein.
Length = 342
Score = 27.1 bits (57), Expect = 7.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -2
Query: 392 WYIWVVHFHVQLLSPVDIWNI 330
WYI+ +HF + +PV+I+ +
Sbjct: 9 WYIYGMHFSAMITTPVNIFGV 29
>Z67990-6|CAA91937.1| 199|Caenorhabditis elegans Hypothetical
protein F02D10.6 protein.
Length = 199
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 308 LFKVWLFHVLYAVLLMDFYNTL 243
++ +W+FH+L A+ L F TL
Sbjct: 46 IYNIWMFHLLIALFLSVFCKTL 67
>U52000-2|AAK68677.1| 529|Caenorhabditis elegans Vang (van
gogh/strabismus planarpolarity protein) homolog protein
1, isoform b protein.
Length = 529
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 314 FILFKVWLFHVLYAVL-LMDFYNTLLSINTELL 219
FILF WLF+++ + D Y ++S +T LL
Sbjct: 187 FILFAFWLFYIVRIMFERYDNYKYIVSYSTSLL 219
>U52000-1|AAA96091.1| 532|Caenorhabditis elegans Vang (van
gogh/strabismus planarpolarity protein) homolog protein
1, isoform a protein.
Length = 532
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 314 FILFKVWLFHVLYAVL-LMDFYNTLLSINTELL 219
FILF WLF+++ + D Y ++S +T LL
Sbjct: 190 FILFAFWLFYIVRIMFERYDNYKYIVSYSTSLL 222
>U40424-1|AAA81456.2| 461|Caenorhabditis elegans Twik family of
potassium channelsprotein 18 protein.
Length = 461
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 379 WSIFTSNCF---HQWIFGTSHWHTLSYFSKCGF 290
W IF + F +W FGTS + TL F+ GF
Sbjct: 237 WVIFCAVLFTFLEEWDFGTSLYFTLISFTTIGF 269
>CU457741-17|CAM36359.1| 300|Caenorhabditis elegans Hypothetical
protein C42C1.16 protein.
Length = 300
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 343 IFGTSHWHTLSYFSKCGFFMFFTLCF*WI 257
+F TS+W T+ + S +F +C WI
Sbjct: 48 LFKTSYWRTIEFNSGIVMLLFAIICKKWI 76
>AF083650-1|AAC32861.1| 461|Caenorhabditis elegans potassium
channel subunit n2P18 protein.
Length = 461
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 379 WSIFTSNCF---HQWIFGTSHWHTLSYFSKCGF 290
W IF + F +W FGTS + TL F+ GF
Sbjct: 237 WVIFCAVLFTFLEEWDFGTSLYFTLISFTTIGF 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,905,811
Number of Sequences: 27780
Number of extensions: 297230
Number of successful extensions: 1024
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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