Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30198
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   1.9  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   2.4  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   3.2  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   3.2  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   3.2  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   3.2  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   3.2  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   3.2  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   3.2  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   3.2  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   3.2  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   3.2  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   4.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   7.5  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 332 IPLAYTFILFKVWLFHVLY 276
           +P + T+ +FKVW+F  L+
Sbjct: 119 LPFSATWEVFKVWIFGDLW 137


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 115 RRRARFTSMMSCQQNICSTSRDFTFTHNYCMSYNSYKS 2
           R R R     S +  I S +   +  +NY  +YN+Y +
Sbjct: 66  RSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNN 103


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 115 RRRARFTSMMSCQQNICSTSRDFTFTHNYCMSYNSY 8
           R R R     S +  I S +   +  +NY  +YN+Y
Sbjct: 66  RSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNY 101


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 115 RRRARFTSMMSCQQNICSTSRDFTFTHNYCMSYNSY 8
           R R R     S +  I S +   +  +NY  +YN+Y
Sbjct: 66  RSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNY 101


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 115 RRRARFTSMMSCQQNICSTSRDFTFTHNYCMSYNSY 8
           R R R     S +  I S +   +  +NY  +YN+Y
Sbjct: 66  RSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNY 101


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 115 RRRARFTSMMSCQQNICSTSRDFTFTHNYCMSYNSY 8
           R R R     S +  I S +   +  +NY  +YN+Y
Sbjct: 66  RSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNY 101


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 115 RRRARFTSMMSCQQNICSTSRDFTFTHNYCMSYNSY 8
           R R R     S +  I S +   +  +NY  +YN+Y
Sbjct: 66  RSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNY 101


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 115 RRRARFTSMMSCQQNICSTSRDFTFTHNYCMSYNSY 8
           R R R     S +  I S +   +  +NY  +YN+Y
Sbjct: 66  RSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNY 101


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 115 RRRARFTSMMSCQQNICSTSRDFTFTHNYCMSYNSY 8
           R R R     S +  I S +   +  +NY  +YN+Y
Sbjct: 66  RSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNY 101


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 115 RRRARFTSMMSCQQNICSTSRDFTFTHNYCMSYNSY 8
           R R R     S +  I S +   +  +NY  +YN+Y
Sbjct: 66  RSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNY 101


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 115 RRRARFTSMMSCQQNICSTSRDFTFTHNYCMSYNSY 8
           R R R     S +  I S +   +  +NY  +YN+Y
Sbjct: 299 RSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNY 334


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 115 RRRARFTSMMSCQQNICSTSRDFTFTHNYCMSYNSY 8
           R R R     S +  I S +   +  +NY  +YN+Y
Sbjct: 299 RSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNY 334


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 115 RRRARFTSMMSCQQNICSTSRDFTFTHNYCMSYNSY 8
           R R R     S +  I S +   +  +NY  +YN+Y
Sbjct: 66  RSRNRTERERSKEPKIISNNNPLSNNYNYNNNYNNY 101


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 115 RRRARFTSMMSCQQNICSTSRDFTFTHNYCMSY 17
           R R++   ++S   N C+ S ++   +NY   Y
Sbjct: 295 RERSKEPKIISSLSNSCNYSNNYYNNNNYKKLY 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,880
Number of Sequences: 438
Number of extensions: 3565
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)