Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30198
(513 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51800.2 68416.m05681 metallopeptidase M24 family protein sim... 70 8e-13
At3g51800.1 68416.m05680 metallopeptidase M24 family protein sim... 70 8e-13
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 29 1.8
At1g11180.1 68414.m01281 secretory carrier membrane protein (SCA... 29 2.4
At3g03100.1 68416.m00306 NADH:ubiquinone oxidoreductase family p... 28 3.2
At5g45510.1 68418.m05590 leucine-rich repeat family protein cont... 28 4.2
At1g65620.1 68414.m07443 LOB domain protein 6 / lateral organ bo... 28 4.2
At3g17540.1 68416.m02240 F-box family protein similar to hypothe... 27 5.6
At1g70505.1 68414.m08114 expressed protein 27 5.6
At1g22130.1 68414.m02766 MADS-box family protein similar to MADS... 27 5.6
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 27 7.4
At3g09670.1 68416.m01146 PWWP domain-containing protein 27 9.8
>At3g51800.2 68416.m05681 metallopeptidase M24 family protein
similar to SP|P50580 Proliferation-associated protein
2G4 {Mus musculus}; contains Pfam profile PF00557:
metallopeptidase family M24
Length = 401
Score = 70.1 bits (164), Expect = 8e-13
Identities = 31/52 (59%), Positives = 41/52 (78%)
Frame = +3
Query: 105 ALRLLKPGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSIIKI 260
ALRL++PG +N VTEAIQK++A Y CK +EG+LSHQLKQ IDG K ++ +
Sbjct: 152 ALRLVRPGKKNTDVTEAIQKVAAAYDCKIVEGVLSHQLKQHVIDGNKVVLSV 203
Score = 33.5 bits (73), Expect = 0.085
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 2 GFIAVVAHTVVVGESEVSGRAADVL 76
GFIA+V HT V+ E +SGR ADV+
Sbjct: 118 GFIALVGHTHVLQEGPLSGRKADVI 142
>At3g51800.1 68416.m05680 metallopeptidase M24 family protein
similar to SP|P50580 Proliferation-associated protein
2G4 {Mus musculus}; contains Pfam profile PF00557:
metallopeptidase family M24
Length = 392
Score = 70.1 bits (164), Expect = 8e-13
Identities = 31/52 (59%), Positives = 41/52 (78%)
Frame = +3
Query: 105 ALRLLKPGTENYAVTEAIQKISAEYGCKPIEGMLSHQLKQFRIDGEKSIIKI 260
ALRL++PG +N VTEAIQK++A Y CK +EG+LSHQLKQ IDG K ++ +
Sbjct: 152 ALRLVRPGKKNTDVTEAIQKVAAAYDCKIVEGVLSHQLKQHVIDGNKVVLSV 203
Score = 33.5 bits (73), Expect = 0.085
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +2
Query: 2 GFIAVVAHTVVVGESEVSGRAADVL 76
GFIA+V HT V+ E +SGR ADV+
Sbjct: 118 GFIALVGHTHVLQEGPLSGRKADVI 142
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 29.1 bits (62), Expect = 1.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 373 IFTSNCFHQWIFGTSHWHTLSYFSKCGF 290
+FT+N QW+FG + W ++ + F
Sbjct: 179 LFTNNLSTQWVFGQNMWRSIEFEHPASF 206
>At1g11180.1 68414.m01281 secretory carrier membrane protein (SCAMP)
family protein contains Pfam domain, PF04144: SCAMP
family
Length = 291
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -1
Query: 468 YEPHYRTFLE--AFSFNWYTLISFLGILVHLGGPFSRPTAF 352
Y P YR F AF+F W+ L L IL L + P F
Sbjct: 179 YRPLYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIVF 219
>At3g03100.1 68416.m00306 NADH:ubiquinone oxidoreductase family
protein contains Pfam PF05071: NADH:ubiquinone
oxidoreductase 17.2 kD subunit; similar to
ethylene-regulated ER6 protein (GI:5669654)
[Lycopersicon esculentum]; identical to Probable
NADH-ubiquinone oxidoreductase subunit B17.2 (EC
1.6.5.3) (EC 1.6.99.3) (Complex I-B17.2) (CI-B17.2)
(Swiss-Prot:Q9M9M9) [Arabidopsis thaliana]
Length = 159
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -1
Query: 279 LRCASDGFL*YSSLHQYGTASVGVRAYPQLAYNHI---QHLFSEWLQ*LHSSQYQAS 118
+RC DG L + +H G VGV + Y + Q+ W++ +Y AS
Sbjct: 31 MRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLGDTQYGRHRWVEYASKDRYNAS 87
>At5g45510.1 68418.m05590 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 1222
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 325 WHTLSYFSKCGFFMFFTLCF*WIFIILFSP 236
WH+L +F CG + L WI F P
Sbjct: 487 WHSLDFFEHCGCVYYRDLITQWILEGYFDP 516
>At1g65620.1 68414.m07443 LOB domain protein 6 / lateral organ
boundaries domain protein 6 (LBD6) / asymmetric leaves2
(AS2) identical to SP|O04479 LOB domain protein 6
(ASYMMETRIC LEAVES2) {Arabidopsis thaliana}
Length = 199
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 177 YGCKPIEGMLSHQLKQFRID 236
YGC + +L HQL+Q +ID
Sbjct: 82 YGCVGVISLLQHQLRQLQID 101
>At3g17540.1 68416.m02240 F-box family protein similar to
hypothetical protein GB:AAD18122 from [Arabidopsis
thaliana];contains Pfam PF00646: F-box domain; contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 396
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 468 YEPHYRTFLEAFSFNWYTLISFLGILVHL 382
Y+ Y+ + FNW LIS+L LVH+
Sbjct: 347 YKEVYKERTKGAHFNWPLLISYLPSLVHI 375
>At1g70505.1 68414.m08114 expressed protein
Length = 338
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 473 FVTNLTIEHFWKPLVSIGTPSSVFWVYWYIWV 378
F+T T EH W+P ++ T +W+ W +V
Sbjct: 14 FITGST-EHTWQPTMTSETNIPSYWLNWRFFV 44
>At1g22130.1 68414.m02766 MADS-box family protein similar to
MADS-box protein (ZAP1) GI:939784 from [Zea mays]
Length = 335
Score = 27.5 bits (58), Expect = 5.6
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Frame = -1
Query: 387 HLGGPFSRPTAFTSGYLEHPIGIHFHTFQSVAFSCSLRCASDGFL*YSSLHQYGTASVGV 208
++GGPF G+L H F + A S LR S Y L Q ++S
Sbjct: 200 NIGGPFVNDVV--EGWLPENGTNQTHLFDASAHSNQLRELSSAM--YEPLLQGSSSSSNQ 255
Query: 207 RAYPQL-AYNHIQHLFSEWLQ*LHSSQYQASGDEE 106
+ NH +F EW Q SS AS ++
Sbjct: 256 NNMSECHVTNHNGEMFPEWAQAYSSSALFASMQQQ 290
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 27.1 bits (57), Expect = 7.4
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -1
Query: 387 HLGGPFSRPT--AFTSGYLEHPIGIHFHTFQSVAFSCSLRCASDGFL*YSSLHQYGTASV 214
HL P RP A++ + +H HF + S S S AS S Q G ++
Sbjct: 82 HLSQPLVRPPPQAYSRPWQQHSSYTHFSSASSPLLSSSSAPASSSSSLPISGQQRGGMAI 141
Query: 213 GVRAYP 196
GV A P
Sbjct: 142 GVPASP 147
>At3g09670.1 68416.m01146 PWWP domain-containing protein
Length = 726
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 279 KNMKKPHFEKYESVCQWDVPNIHW*KQLDVKMDHPDVPIYPKN 407
K+ PH EK V Q VP + +++ + P P+ PKN
Sbjct: 486 KSGNVPHCEKKRKVVQSKVPKSTKKIKANLQTEDPGSPVSPKN 528
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,080,889
Number of Sequences: 28952
Number of extensions: 269126
Number of successful extensions: 785
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -