Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30197
         (850 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O96564 Cluster: Cubitus interruptus; n=21; Protostomia|...    46   0.001
UniRef50_UPI0000D559AB Cluster: PREDICTED: similar to Cubitus in...    35   2.2  
UniRef50_Q9ADP1 Cluster: Putative uncharacterized protein SCO401...    33   9.1  
UniRef50_A4BQP7 Cluster: Regulatory protein; n=3; Gammaproteobac...    33   9.1  
UniRef50_Q05159 Cluster: Early growth response protein 2b; n=15;...    33   9.1  

>UniRef50_O96564 Cluster: Cubitus interruptus; n=21;
           Protostomia|Rep: Cubitus interruptus - Junonia coenia
           (Peacock butterfly) (Precis coenia)
          Length = 466

 Score = 46.0 bits (104), Expect = 0.001
 Identities = 24/40 (60%), Positives = 25/40 (62%)
 Frame = +2

Query: 659 MHHATHYPXXXXXXXXXXXXRAGATSELSYLAAVHPA*RP 778
           MHHATHY              AGATSELSYLAA+HPA RP
Sbjct: 1   MHHATHY-HHHAQLAAAAAAAAGATSELSYLAALHPAYRP 39


>UniRef50_UPI0000D559AB Cluster: PREDICTED: similar to Cubitus
           interruptus protein; n=1; Tribolium castaneum|Rep:
           PREDICTED: similar to Cubitus interruptus protein -
           Tribolium castaneum
          Length = 1253

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = +1

Query: 589 PLQFPSAFAAFHATTPPGDPVRSYASRY 672
           PLQFPSAFAAFHA  P     R++  RY
Sbjct: 29  PLQFPSAFAAFHAPLPVDQ--RTHEGRY 54


>UniRef50_Q9ADP1 Cluster: Putative uncharacterized protein SCO4015;
           n=2; Streptomyces|Rep: Putative uncharacterized protein
           SCO4015 - Streptomyces coelicolor
          Length = 307

 Score = 33.1 bits (72), Expect = 9.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 725 LPGRCRCCS*LSMMMDNA*RDA*LRTGSPGGVVAW 621
           +P RC+CC  LS+ M  A + A LR  + G V+ W
Sbjct: 1   MPARCQCCPLLSVGMAQAWKCAGLRWAADGPVLTW 35


>UniRef50_A4BQP7 Cluster: Regulatory protein; n=3;
           Gammaproteobacteria|Rep: Regulatory protein -
           Nitrococcus mobilis Nb-231
          Length = 386

 Score = 33.1 bits (72), Expect = 9.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 554 GGPGNSGKRFPTHYSFPRRLLPSMLRPHQGTPSAAMHH 667
           GGP N+  R  TH++  ++LLP  +   +  P + MH+
Sbjct: 206 GGPPNNWSRETTHHNVLKKLLPGAVEGSEWDPDSIMHY 243


>UniRef50_Q05159 Cluster: Early growth response protein 2b; n=15;
           Euteleostomi|Rep: Early growth response protein 2b -
           Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 412

 Score = 33.1 bits (72), Expect = 9.1
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 527 LNMPDRESVGGPGNSGKRFPTHYSFPRRLLPSMLRP--HQGTPSAAMHHATHYP 682
           LN     ++GGPG  G R PT Y+     L  +LRP  +   PS    H   YP
Sbjct: 247 LNTIRNFTLGGPGPDGPRLPTAYTPQNLPLRPILRPRKYPNRPSKTPVHERPYP 300


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 831,919,697
Number of Sequences: 1657284
Number of extensions: 16970463
Number of successful extensions: 37497
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37478
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 74603367202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)