Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30197
(850 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax pr... 24 1.7
AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax pr... 24 1.7
AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax pr... 24 1.7
AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax pr... 24 1.7
AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax pr... 24 1.7
AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax pr... 24 1.7
AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein. 24 1.7
AF261823-1|AAG13010.1| 157|Tribolium castaneum cephalothorax pr... 24 1.7
AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduce... 24 1.7
DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein. 21 9.3
>AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 535 HIQSPNTTTH 506
H+QSPNT TH
Sbjct: 85 HLQSPNTQTH 94
>AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 535 HIQSPNTTTH 506
H+QSPNT TH
Sbjct: 85 HLQSPNTQTH 94
Score = 21.4 bits (43), Expect = 9.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 625 ATTPPGDPVRSYASR 669
+T+PPG P S AS+
Sbjct: 150 STSPPGKPATSTASQ 164
>AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax
protein.
Length = 230
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 535 HIQSPNTTTH 506
H+QSPNT TH
Sbjct: 85 HLQSPNTQTH 94
Score = 21.4 bits (43), Expect = 9.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 625 ATTPPGDPVRSYASR 669
+T+PPG P S AS+
Sbjct: 150 STSPPGKPATSTASQ 164
>AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 535 HIQSPNTTTH 506
H+QSPNT TH
Sbjct: 85 HLQSPNTQTH 94
Score = 21.4 bits (43), Expect = 9.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 625 ATTPPGDPVRSYASR 669
+T+PPG P S AS+
Sbjct: 150 STSPPGKPATSTASQ 164
>AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax
protein.
Length = 297
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 535 HIQSPNTTTH 506
H+QSPNT TH
Sbjct: 85 HLQSPNTQTH 94
Score = 21.4 bits (43), Expect = 9.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 625 ATTPPGDPVRSYASR 669
+T+PPG P S AS+
Sbjct: 150 STSPPGKPATSTASQ 164
>AF416773-1|AAL09697.1| 268|Tribolium castaneum cephalothorax
protein.
Length = 268
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 535 HIQSPNTTTH 506
H+QSPNT TH
Sbjct: 41 HLQSPNTQTH 50
Score = 21.4 bits (43), Expect = 9.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 625 ATTPPGDPVRSYASR 669
+T+PPG P S AS+
Sbjct: 106 STSPPGKPATSTASQ 120
>AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein.
Length = 312
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 535 HIQSPNTTTH 506
H+QSPNT TH
Sbjct: 85 HLQSPNTQTH 94
Score = 21.4 bits (43), Expect = 9.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 625 ATTPPGDPVRSYASR 669
+T+PPG P S AS+
Sbjct: 150 STSPPGKPATSTASQ 164
>AF261823-1|AAG13010.1| 157|Tribolium castaneum cephalothorax
protein.
Length = 157
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 535 HIQSPNTTTH 506
H+QSPNT TH
Sbjct: 85 HLQSPNTQTH 94
>AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduced
Scr protein.
Length = 312
Score = 23.8 bits (49), Expect = 1.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 535 HIQSPNTTTH 506
H+QSPNT TH
Sbjct: 85 HLQSPNTQTH 94
Score = 21.4 bits (43), Expect = 9.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 625 ATTPPGDPVRSYASR 669
+T+PPG P S AS+
Sbjct: 150 STSPPGKPATSTASQ 164
>DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein.
Length = 822
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 827 LKGF*APLQGMVQ*GHWAVKPGGPQQGSS 741
L+G AP++ ++ G A+ GP++ +S
Sbjct: 182 LQGISAPVEAHLRKGRGAIGAYGPEKSAS 210
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,587
Number of Sequences: 336
Number of extensions: 4225
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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