Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30197
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665...    29   3.5  
09_06_0271 + 21959213-21960559                                         28   8.2  
09_04_0444 - 17649685-17650524                                         28   8.2  
02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476     28   8.2  

>09_04_0727 +
           19765175-19765384,19765523-19765595,19766476-19766570,
           19766666-19768450,19768533-19768721,19768816-19768958,
           19769075-19769320,19769975-19770059,19770117-19770191,
           19770304-19770369,19770466-19770712,19770824-19771242
          Length = 1210

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 544 GVSGRSRELWEAVSYPLQFPSAFAAFHATTPPG 642
           G+S     L E V +PL +P  FA +H T P G
Sbjct: 389 GLSDYIDALKEMVFFPLLYPDFFANYHITPPRG 421


>09_06_0271 + 21959213-21960559
          Length = 448

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 544 GVSGRSRELWEAVSYPLQFPSAFAAFHATTPPG 642
           G   + RE+ EAV  PL  P  FAA     P G
Sbjct: 194 GCEAQKREVREAVELPLTHPELFAAAGVDPPRG 226


>09_04_0444 - 17649685-17650524
          Length = 279

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +2

Query: 509 CGCVRTLNMPDRESVGGPGNSGKRFPTHYSFPRRLLPS-MLRPHQGTPSAAMHHATHY 679
           C C R  +  + ES+ G G+    F      P    P     P+  TP+  +HH  H+
Sbjct: 96  CNCHRNFHRKESESLAGEGSP---FSPAAVVPYGATPHHQFSPYYRTPAGYLHHHQHH 150


>02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476
          Length = 370

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
 Frame = +2

Query: 443 MDEMRLELT*S*LKSEVEKWTVCGCVRT-LNMPDRESVGGP------GNSGKRFPTHYSF 601
           M E RLE   +    E E W VC   +  +    R + G P      G  G   P   S 
Sbjct: 130 MHEYRLETNENGTTPE-EGWVVCRVFKKRVATVRRMADGSPCWFDDHGAVGAFMPD-LSS 187

Query: 602 PRRLLPSMLRPHQGTPSAAMHHATHY 679
           PR+LLP     H G+ SAA++H  H+
Sbjct: 188 PRQLLPHHHHHHPGS-SAALYHGHHH 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,466,044
Number of Sequences: 37544
Number of extensions: 465029
Number of successful extensions: 1102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)