Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30197
         (850 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)                    32   0.68 
SB_45627| Best HMM Match : AAA (HMM E-Value=0)                         31   1.2  
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         30   2.7  
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  

>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 276

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 562 RELWEAVSYPLQFPSAFAAFHATTPPGDPVRSYASRY 672
           R+ W A  +PL F SAF A   TT    PV    +RY
Sbjct: 210 RKQWMADEFPLHFVSAFGAGFVTTCVASPVDVVKTRY 246


>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 544 GVSGRSRELWEAVSYPLQFPSAFAAFHATTPPG 642
           G+ G  REL E V YP++ P  F  F  T   G
Sbjct: 314 GLEGVKRELQELVQYPVEHPDKFLKFGMTPSKG 346


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 479 LKSEVEKWTVCG---CVRTLNMPDRESVGGPGNSGKRFPTHY 595
           +K  +  W  CG   CV+T N      VG  GN+G+RF  HY
Sbjct: 420 IKLSLCAWDSCGFGECVKTSNGTHWRCVGHVGNTGERF-EHY 460


>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1584

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 586 YPLQFPSAFAAFHATTPPGDPVRSYASRYALSI 684
           YP  +P  ++     + PGD ++SY   Y  +I
Sbjct: 217 YPRSYPRTYSVLAGVSSPGDALKSYTQSYTNNI 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,066,328
Number of Sequences: 59808
Number of extensions: 541207
Number of successful extensions: 1051
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)