Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30197
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24660.1 68417.m03530 zinc finger homeobox family protein / Z...    31   0.97 
At1g65230.1 68414.m07395 expressed protein                             29   3.0  
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    29   3.9  
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    29   3.9  
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes...    28   6.8  

>At4g24660.1 68417.m03530 zinc finger homeobox family protein /
           ZF-HD homeobox family protein hypothetical protein
           T8K22.16, Arabidopsis thalianachromosome II BAC T8K22,
           PATX:G3184285
          Length = 220

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 497 KWTVCGCVRTLNMPDRESVGGPGNSGKRFPTHYSFP 604
           K   CGC R  +  + ES+GG  +   R PT+Y+ P
Sbjct: 84  KCAACGCHRNFHRKETESIGGRAH---RVPTYYNRP 116


>At1g65230.1 68414.m07395 expressed protein
          Length = 286

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 454 ETRIDLIVT*K*SGKVDCVWLC*DFEYA*SG-VSGRSRELWEAVSYPLQFPSAFAAFHAT 630
           E  ID     K   K+D   LC DFE   S  V   +R+L   +    +   AFA +  +
Sbjct: 47  EVSIDKSEVDKLVDKIDFGELCNDFECTSSPQVESTARQLVRDILEIREGNRAFACYAVS 106

Query: 631 TPPGDPVRSYASR 669
               DPVRS+  R
Sbjct: 107 VKYKDPVRSFTGR 119


>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -1

Query: 643 PLVGS*HGR--QQTPRETVVGRKPLPRVPGT-SH*LPIRHIQSPNTTTHSPLFH 491
           P  GS HG     TP  +  G  P    P T SH  P  H  +P+T +H+P  H
Sbjct: 40  PPSGS-HGTPPSHTPPSSNCGSPPYDPSPSTPSHPSPPSHTPTPSTPSHTPTPH 92


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
           protodermal factor 1 [Arabidopsis thaliana]
           gi|4929130|gb|AAD33869
          Length = 306

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -1

Query: 643 PLVGS*HGR--QQTPRETVVGRKPLPRVPGT-SH*LPIRHIQSPNTTTHSPLFH 491
           P  GS HG     TP  +  G  P    P T SH  P  H  +P+T +H+P  H
Sbjct: 40  PPSGS-HGTPPSHTPPSSNCGSPPYDPSPSTPSHPSPPSHTPTPSTPSHTPTPH 92


>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
           from this gene
          Length = 1035

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 526 FEYA*SGVSGRSRELWEAVSYPLQFPSAFAAFHATTPPGD 645
           FE+  +G+    + + E  +Y L F  +++ F+ +  PGD
Sbjct: 820 FEFTQAGIESACQHVSEVAAYRLIFLDSYSVFYESLYPGD 859


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,704,943
Number of Sequences: 28952
Number of extensions: 353133
Number of successful extensions: 832
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)