Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30195
         (596 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    24   0.85 
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   3.4  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   7.9  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   7.9  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 282 INVRSSTCISSVTTALILTSVI 347
           INV +  C S +TT L+L +V+
Sbjct: 507 INVLAEACGSDITTRLLLPTVL 528


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 510 PQCNPRQGNCPGPNARLPLKQFDEQL 433
           P+ NP++ + P P   L  +++DE +
Sbjct: 243 PKRNPKEADYPAPLYELIDRKYDENV 268


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 88  LFNKIKKIGVRVIVDLIPNYVFTNH 162
           +FN+ +   V V++D+IP +   +H
Sbjct: 7   MFNQEQNNNVPVVLDVIPPHYNIHH 31


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +2

Query: 146 TCSPTIPGSYRVRTAL*PYTDYFIWAKG 229
           TC P +P     R    PY  Y  W  G
Sbjct: 245 TCQPAVPYVPFYRYCYRPYPVYNQWWSG 272


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,894
Number of Sequences: 336
Number of extensions: 2999
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)