Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30195
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    34   0.014
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    29   0.68 
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p...    29   0.68 
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    28   1.2  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    28   1.2  
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    27   2.1  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    27   2.7  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    27   2.7  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    26   4.8  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    25   6.3  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    25   6.3  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   8.4  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    25   8.4  

>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 34.3 bits (75), Expect = 0.014
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 34  VPTYEVLDKR-DTLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQSENS 189
           V  Y+ +D R  TL++   L   + +  +++++DL+ N+    H WF +S +S
Sbjct: 73  VSDYKQIDSRYGTLEDLDRLMKALHERDMKLVMDLVLNHTSDQHEWFKESRSS 125



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 257 NTPAFTRSDKRQKFYLHQFCDNCADLNFGNPKVVE 361
           +T A+   +  Q++YLH +     DLN+  PKV E
Sbjct: 158 DTSAWEWDEATQEYYLHLWSVGQPDLNWETPKVRE 192


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -3

Query: 543 WVRFXPPRKLVPQCNPRQGNCPGPNARLPLKQFDEQLTRVINSDPTSTGHQSQALGPM 370
           ++RF  P  + PQ +    +CP  N R  L    + +  V N   ++  H   +  PM
Sbjct: 338 FLRFVNPAIISPQTSMLLDSCPSDNVRKTLATIAKIIQSVANGTSSTKTHLDVSFQPM 395


>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 340

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +2

Query: 254 INTPAFTRSDKRQKFYLHQFCDNCADLNFGNPKVVEKFDMGPKACDWCPVLVGSELI 424
           +N P+FT         +   C  C +     P +VE+F  G   C  C +++G  +I
Sbjct: 1   MNAPSFTGLPTSM-LSVKMICSECRE---DPPNLVEEFSSGDTVCGSCGLVLGDRII 53


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 195 SPTLIISSGPRDNLSNWGSKSTRQRLHEAINV 290
           SP++ +SS PR N+  +   ST++ L E  N+
Sbjct: 25  SPSIDVSSSPRPNVERFSPCSTKKDLLEGNNI 56


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +3

Query: 186 QHCSPTLIISSGPRDNLSNWGSKSTRQRLHEAINVRSSTCIS 311
           Q+  PT+II + PRDN     SKS   +  E +N+ SS  +S
Sbjct: 85  QNLVPTVIIPASPRDN----ASKSVVSK-KEVVNLSSSVALS 121


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/64 (25%), Positives = 33/64 (51%)
 Frame = -2

Query: 367 ELLNNFGITEVKISAVVTELMQVELLTFIASCKRWRVDFEPQLDRLSLGPDEIISVGLQC 188
           +++NN   T+  +S ++    +++L T ++  K +     P+L   +LG  E I    +C
Sbjct: 77  QVINNACATQALLSVLLNHSDEIDLGTTLSEFKDFSKTLPPELKGEALGNSEHI----RC 132

Query: 187 CSHS 176
           C +S
Sbjct: 133 CHNS 136


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 480 PGPNARLPLKQFDEQLTRVINSDPTSTGHQSQALGPMSNFSTTLGLP 340
           P P + +PL+Q  +  T   ++  +ST +  Q + P+++ S  L  P
Sbjct: 11  PTPTSSIPLRQMSQPTTSAPSNSASSTPYSPQQV-PLTHNSYPLSTP 56


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 70  VCHVCRALRKSALGRTRPE 14
           VC +C +L K+A+GR RP+
Sbjct: 102 VCGLCVSLLKNAVGRPRPD 120


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 127 VDLIPNYVFTNHTWFVQSENSTVALH*LFHLGQGTTCLIGVQNQHASVYTKR 282
           VDL+P  V       +  E  T+A H   +   G   LI +  Q AS+++ +
Sbjct: 257 VDLVPTSVAAAWVKILAKEYPTIAFHASINNSFGKGSLIQILRQFASLHSDK 308


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 486 NCPGPNARLPLKQFDEQLTRVINS 415
           N PGPN  L    ++E  T V+N+
Sbjct: 742 NTPGPNQNLARSIYEELRTNVVNN 765


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 147 VVRDQINNDSYSDLLNFV 94
           V+ D +++D YSDL ++V
Sbjct: 377 VINDDVSSDDYSDLFSYV 394


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 177 E*EQHCSPTLIISSGPRDNLSNW 245
           E   HCSP +++S  P+D + ++
Sbjct: 193 EMSNHCSPKIVLSLRPQDKIPDF 215


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 52  LDKRDTLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQSE 183
           L+ ++ +   K + N  +KI   ++ DL+P+   T   WF   E
Sbjct: 125 LESKNLVKSIKSVKNPTRKI--YMLYDLVPSTELTGGPWFTDQE 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,160
Number of Sequences: 5004
Number of extensions: 49113
Number of successful extensions: 184
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)