Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30195
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  37   0.014
SB_33998| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-19)                 31   0.53 
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 30   1.6  
SB_32455| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_28173| Best HMM Match : Sugar_tr (HMM E-Value=0.022)                28   5.0  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_20347| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-20)         28   6.6  
SB_45161| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011)              27   8.7  
SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.7  
SB_46437| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)                27   8.7  

>SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 12/41 (29%), Positives = 27/41 (65%)
 Frame = +1

Query: 67  TLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQSENS 189
           T+++F+ L   I   G+++++D +PN+    H WF++S ++
Sbjct: 97  TMEDFESLLQDIHSRGMKLLLDFVPNHTSDQHDWFLESRSN 137



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 266 AFTRSDKRQKFYLHQFCDNCADLNFGNPKVV 358
           A++   K  ++YLHQF     DLNF NP VV
Sbjct: 169 AWSLDRKTNQYYLHQFFKEQPDLNFRNPDVV 199


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +1

Query: 1   KTFKVQGVFVQVPTYEVLDKRDTLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQS 180
           K   +  VF +    +V +    +++F+ L  K     +RVIVD +PN+    + WF +S
Sbjct: 683 KVLSIGAVFSEEDLQDVNNALGKMEDFQNLLKKAHDRKMRVIVDFVPNHTSKKNKWFEES 742



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 266 AFTRSDKRQKFYLHQFCDNCADLNFGNPKVVE 361
           A+ +  K  ++YLHQF  +  DLN+    VV+
Sbjct: 771 AWEKDPKTNQYYLHQFSVDQPDLNYHEEAVVK 802


>SB_33998| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-19)
          Length = 331

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 24/72 (33%), Positives = 37/72 (51%)
 Frame = -2

Query: 376 AHVELLNNFGITEVKISAVVTELMQVELLTFIASCKRWRVDFEPQLDRLSLGPDEIISVG 197
           AH++L+NN  +  +   AVVT L    ++  I S KR RV   P    LSL   + + VG
Sbjct: 20  AHLQLVNNVYLILLGTFAVVTVLGNGLVILVILSRKRLRVQESPNWFVLSLAIADFL-VG 78

Query: 196 LQCCSHSVRTRY 161
               ++++  RY
Sbjct: 79  FFTFTNAIICRY 90


>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1182

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 260 TPAFTRSDKRQKFYLHQFCDNCADLNFGNPKV 355
           TP     DK Q  Y  + C+ CAD  +GNP V
Sbjct: 402 TPPSVLCDKCQVGYTGRQCEECADGYYGNPLV 433


>SB_32455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 490 LTRVTLRDELSWRXKAHPTIFPKALKELLG 579
           L  V++ D+LSW      TIF KALK L G
Sbjct: 653 LLGVSISDDLSWNLHCE-TIFKKALKRLYG 681


>SB_28173| Best HMM Match : Sugar_tr (HMM E-Value=0.022)
          Length = 453

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 242 LGFKINTPAFTRSDKRQKFYLHQFCDNCADLNFGNP 349
           L F + TP F  SD+       + CDNC    F  P
Sbjct: 62  LVFAMGTPNFHCSDENSTCPQSKCCDNCTSYTFDGP 97


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 400  RTPIT-GLGAHVELLNNFGITEVKISAVVTELMQVELLTFIASCKRWRVDFEPQL 239
            + PIT GL     L +N  I       +  + M  E  T + +C+RW +  +PQL
Sbjct: 3622 KIPITEGLDPLSLLTDNATIATWNNENLPADRMSTENATILTNCERWPLMIDPQL 3676


>SB_20347| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-20)
          Length = 1074

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 507 QCNPRQGNCP-GPNARLPL-KQFDEQLTRVINSDPTSTGHQSQALGPMSNFSTTLGLPKL 334
           +C  R GN     +AR+P+    D +LT ++  D  S  H S   G ++   T   +PK 
Sbjct: 638 RCRGRLGNSELATDARMPIILPRDHRLTELVILDCHSKLHHSGVSGTLAQLRTRFWVPKG 697

Query: 333 R 331
           R
Sbjct: 698 R 698


>SB_45161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 144 VRDQINNDSYSDLLNFVEQNFEFVQCVTFVEH 49
           V D++  DS  DLLNFV      +Q   FVEH
Sbjct: 200 VIDKVGGDSIDDLLNFVSS----LQFTGFVEH 227


>SB_11070| Best HMM Match : Sugar_tr (HMM E-Value=0.00011)
          Length = 468

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +2

Query: 242 LGFKINTPAFTRSDKRQKFYLHQFCDNCADLNFGNP 349
           L F   TP F  SD        + CDNC+   F  P
Sbjct: 61  LVFAFGTPKFHCSDVNSTCAPSKCCDNCSSYTFDGP 96


>SB_896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 968

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +2

Query: 242 LGFKINTPAFTRSDKRQKFYLHQFCDNCADLNFGNP 349
           L F   TP F  SD        + CDNC+   F  P
Sbjct: 574 LVFAFGTPKFHCSDVNSTCAPSKCCDNCSSYTFDGP 609


>SB_46437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 273 HEAINV-RSSTCISSVTTALILTSVIPKLLRSSTWAPRPVIGVR 401
           HE +N+ +SST    + TA  +  V+P+  + ST   R   G+R
Sbjct: 196 HEPLNILKSSTSYRDIRTAEPVLPVLPEQYQKSTVERRKTCGLR 239


>SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)
          Length = 1272

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 6   IQSSGRVRPSADLRSARQT*HTGRIQNS 89
           ++ SG VR S D+R++    + GR++NS
Sbjct: 305 VRKSGGVRSSGDVRNSGSVRNNGRVRNS 332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,746,148
Number of Sequences: 59808
Number of extensions: 387926
Number of successful extensions: 1231
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)