Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30195
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical pr...    33   0.12 
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ...    33   0.20 
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ...    33   0.20 
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou...    33   0.20 
Z75542-3|CAA99860.1|  359|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81543-5|CAB04427.2|  507|Caenorhabditis elegans Hypothetical pr...    28   4.4  

>Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical
           protein C50B6.7 protein.
          Length = 713

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +1

Query: 31  QVPTYEVLDKRDTLDEFKILFNKIKKIGVRVIVDLIPNYV 150
           Q  +Y++  +     EF+ + N+  K+GVR+IVD++ N++
Sbjct: 85  QPVSYKLDSRSGNEQEFQDMVNRCNKVGVRIIVDIVMNHM 124


>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform b
           protein.
          Length = 1047

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +3

Query: 228 DNLSNWGSKSTRQRLHEAINVRSSTCISSVTTALILTSV----IPKLLRSSTWA 377
           DN+  W SK +  RL  AI       +S      +LTS+    IP   RS TWA
Sbjct: 320 DNIDVWASKLSLSRLKLAIKYEQKAFVSHPHCQQLLTSIWYEGIPYRQRSGTWA 373


>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform a
           protein.
          Length = 1027

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +3

Query: 228 DNLSNWGSKSTRQRLHEAINVRSSTCISSVTTALILTSV----IPKLLRSSTWA 377
           DN+  W SK +  RL  AI       +S      +LTS+    IP   RS TWA
Sbjct: 300 DNIDVWASKLSLSRLKLAIKYEQKAFVSHPHCQQLLTSIWYEGIPYRQRSGTWA 353


>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
           cation channel proteinprotein.
          Length = 1027

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +3

Query: 228 DNLSNWGSKSTRQRLHEAINVRSSTCISSVTTALILTSV----IPKLLRSSTWA 377
           DN+  W SK +  RL  AI       +S      +LTS+    IP   RS TWA
Sbjct: 300 DNIDVWASKLSLSRLKLAIKYEQKAFVSHPHCQQLLTSIWYEGIPYRQRSGTWA 353


>Z75542-3|CAA99860.1|  359|Caenorhabditis elegans Hypothetical
           protein F55D12.3 protein.
          Length = 359

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 305 HQFCDNCADLNFGNPKVVEKFDMGPKACDWCPVLVGSELITR--VNCSSN 448
           H FCD C   +FG       F+ G  +C+ C +     L TR  + CS N
Sbjct: 12  HSFCDICGKKSFG-------FNYGAHSCNACKMFFRRALSTRKILQCSKN 54


>Z81543-5|CAB04427.2|  507|Caenorhabditis elegans Hypothetical
           protein F49B2.5 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 373 HVELLNNFGI-TEVKISAVVTELMQVELLTFIASCKRWRVDFEPQLDRLS 227
           H +LL+ + + T  +   +VTELMQ  LLTF+   +R R    PQL  +S
Sbjct: 292 HPKLLSLYAVCTRDEPILIVTELMQENLLTFLQ--RRGRQCQMPQLVEIS 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,693,097
Number of Sequences: 27780
Number of extensions: 290401
Number of successful extensions: 930
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)