Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30195
(596 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45350.1 68415.m05643 pentatricopeptide (PPR) repeat-containi... 32 0.33
At4g38270.1 68417.m05406 glycosyl transferase family 8 protein c... 31 0.58
At3g63130.1 68416.m07090 RAN GTPase activating protein 1 (RanGAP... 30 1.3
At3g14730.1 68416.m01862 pentatricopeptide (PPR) repeat-containi... 30 1.3
At4g30870.1 68417.m04383 repair endonuclease family protein cont... 29 2.4
At1g69830.1 68414.m08034 alpha-amylase, putative / 1,4-alpha-D-g... 29 3.1
At5g47780.1 68418.m05902 glycosyl transferase family 8 protein c... 28 4.1
At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi... 28 4.1
At1g76405.2 68414.m08880 expressed protein 28 5.4
At4g18740.1 68417.m02769 expressed protein 27 7.2
At1g16400.1 68414.m01961 cytochrome P450 family protein similar ... 27 7.2
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS... 27 9.5
At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine deacet... 27 9.5
At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine deacet... 27 9.5
At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine deacet... 27 9.5
>At2g45350.1 68415.m05643 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 606
Score = 31.9 bits (69), Expect = 0.33
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 244 QLDRLSLGPDEIISVG-LQCCSHSVRTRYG 158
Q++RLSL PD+I VG L CSHS + G
Sbjct: 434 QIERLSLKPDDITFVGVLNACSHSGLVKEG 463
>At4g38270.1 68417.m05406 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 680
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 332 LNFGNPKVVEKFDMGPKACDW 394
LNF NPK+ E FD G AC W
Sbjct: 544 LNFSNPKISENFDAG--ACGW 562
>At3g63130.1 68416.m07090 RAN GTPase activating protein 1 (RanGAP1)
contains Pfam PF00560: Leucine Rich Repeat domains;
identical to RAN GTPase activating protein 1
(GI:6708466)[Arabidopsis thaliana]
Length = 535
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = -3
Query: 456 LKQFDEQLTRVINSDPTSTGHQSQALGPMSNFSTTLGLPKLRSAQLSQN 310
L +QLT V SD + +++AL M+ FS+ L KLR LS N
Sbjct: 171 LSSIKDQLTEVDLSDFVAGRPEAEALEVMNMFSSALEGSKLRYLNLSDN 219
>At3g14730.1 68416.m01862 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 653
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 283 IASCKRWRVDFEPQLDRLSLGPDEIISVG-LQCCSHS 176
+ SC +D + R + PDEI VG LQ CSHS
Sbjct: 445 VQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHS 481
>At4g30870.1 68417.m04383 repair endonuclease family protein
contains Pfam PF02732 : ERCC4 domain; similar to repair
endonuclease (TIGR:At5g41150) [Arabidopsis thaliana]
Length = 661
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 2 RHSKFRACSSKCRLTKCSTNVTHWTNSKFCSTKLRR 109
R KFR+C+ L CS+ +H K CS+ +RR
Sbjct: 302 RAKKFRSCNDGSTLNPCSSGSSHAV--KACSSSVRR 335
>At1g69830.1 68414.m08034 alpha-amylase, putative /
1,4-alpha-D-glucan glucanohydrolase, putative similar to
SP|P17859 Alpha-amylase precursor (EC 3.2.1.1)
(1,4-alpha-D-glucan glucanohydrolase) {Vigna mungo},
alpha-amylase [Malus x domestica] GI:7532799; contains
Pfam profile PF00128: Alpha amylase, catalytic domain
Length = 887
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 43 YEVLDKRDTLDEFKILFNKIKKIGVRVIVDLIPNY 147
Y + + T+DE K K K+G++V+ D + N+
Sbjct: 551 YNLNSRYGTIDELKDTVKKFHKVGIKVLGDAVLNH 585
>At5g47780.1 68418.m05902 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8; strong similarity to unknown protein
(emb|CAB71043.1)
Length = 616
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 332 LNFGNPKVVEKFDMGPKACDW 394
LNF NP + + FD P+AC W
Sbjct: 480 LNFSNPLISKNFD--PRACGW 498
>At2g39930.1 68415.m04907 isoamylase, putative / starch debranching
enzyme, putative similar to isoamylase from [Solanum
tuberosum] GI:27728145, [Triticum aestivum] GI:17932898,
[Hordeum vulgare] GI:21314275, [Oryza sativa]
GI:3252794; contains Pfam profiles PF00128: Alpha
amylase catalytic domain, PF02922: Isoamylase N-terminal
domain
Length = 783
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 70 LDEFKILFNKIKKIGVRVIVDLIPNY 147
++EFKIL + K G+ VI+D++ N+
Sbjct: 315 INEFKILVKEAHKRGIEVIMDVVLNH 340
>At1g76405.2 68414.m08880 expressed protein
Length = 167
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 275 RSDKRQKFYLHQFCDNCADLNFGNPKVVEKF 367
R+DKR F + CD DLN NPK +F
Sbjct: 86 RADKRVTFNIKGRCDIDQDLNQKNPKGAAEF 116
>At4g18740.1 68417.m02769 expressed protein
Length = 245
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = -3
Query: 528 PPRKLVPQCNPRQGNCPGPNARLPLKQFDEQLTRVINSDPTSTGHQSQALGPMSNFSTTL 349
PP V + P + GP +LP+ D+ L ++ + ++ ++ L + +
Sbjct: 167 PPSSFVKR-TPLSSSASGPRGKLPVSNSDKALGKLTKKEEKASLIETMKLAELKEVAKNR 225
Query: 348 GL---PKLRSAQL 319
G+ KLR ++L
Sbjct: 226 GIKGYSKLRKSEL 238
>At1g16400.1 68414.m01961 cytochrome P450 family protein similar to
gb|AF069494 cytochrome P450 from Sinapis alba and is a
member of the PF|00067 Cytochrome P450 family; identical
to cytochrome P450 CYP79F2 (CYP79F2) GI:10946207
Length = 537
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 587 PSEPKSSFKAFGKIVGCALXLQESSSRNVTRVKEIARDPTRVFP 456
P + + K ++VG +QES RN+ +K R+ R+ P
Sbjct: 348 PEILRKALKELDEVVGKDRLVQESDIRNLNYLKACCRETFRIHP 391
>At4g26090.1 68417.m03756 disease resistance protein RPS2
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
identical to RPS2 (gi:13661831)
Length = 909
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Frame = -3
Query: 186 VLTLYEPGMVGEHVVRDQINNDSYS-----DLLNFVEQNFEFVQC 67
++ +Y PG VG+ + INN+ + D+L +V+ + EF +C
Sbjct: 177 IIGVYGPGGVGKTTLMQSINNELITKGHQYDVLIWVQMSREFGEC 221
>At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain;
Length = 925
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 347 PKVVEKFDMGPKA---CDWCPVLVGSELITRVNCSS 445
PK D+ PK CD P LVG +++TR+ +S
Sbjct: 521 PKRTRMCDLQPKRTSMCDLPPKLVGEKILTRIPITS 556
>At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
Length = 905
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 347 PKVVEKFDMGPKA---CDWCPVLVGSELITRVNCSS 445
PK D+ PK CD P LVG +++TR+ +S
Sbjct: 501 PKRTRMCDLQPKRTSMCDLPPKLVGEKILTRIPITS 536
>At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
Length = 925
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 347 PKVVEKFDMGPKA---CDWCPVLVGSELITRVNCSS 445
PK D+ PK CD P LVG +++TR+ +S
Sbjct: 521 PKRTRMCDLQPKRTSMCDLPPKLVGEKILTRIPITS 556
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,897,861
Number of Sequences: 28952
Number of extensions: 264588
Number of successful extensions: 797
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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