Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30194
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   3.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   7.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.5  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -3

Query: 552 SRLFYCLYNSNSSCVLIETKHATSASYFILYPCLSHRFF 436
           ++L   L+ S  + ++ E     +A +++++PC S RF+
Sbjct: 53  NKLAMKLFGSKKA-LMKERIRQKAAGHWVIHPCSSFRFY 90


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -3

Query: 552 SRLFYCLYNSNSSCVLIETKHATSASYFILYPCLSHRFF 436
           ++L   L+ S  + ++ E     +A +++++PC S RF+
Sbjct: 53  NKLAMKLFGSKKA-LMKERIRQKAAGHWVIHPCSSFRFY 90


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -3

Query: 552 SRLFYCLYNSNSSCVLIETKHATSASYFILYPCLSHRFF 436
           ++L   L+ S  + ++ E     +A +++++PC S RF+
Sbjct: 53  NKLAMKLFGSKKA-LMKERIRQKAAGHWVIHPCSSFRFY 90


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 263 N*WFTECQLFSYGTSIVTSNVIRYKIINTNVSKDV 159
           N W    +L  Y    + S+ I Y+I   NV + V
Sbjct: 496 NVWVLSNKLAMYLYGSIDSSKINYRIFKANVKEAV 530


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 606  LEPYSLLTKY*YYSIVIVSR 547
            LEP  ++TKY  Y+ V+  R
Sbjct: 1238 LEPNGIITKYNLYTRVVDGR 1257


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 606  LEPYSLLTKY*YYSIVIVSR 547
            LEP  ++TKY  Y+ V+  R
Sbjct: 1234 LEPNGIITKYNLYTRVVDGR 1253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,725
Number of Sequences: 438
Number of extensions: 4378
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)