Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30192
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 39 6e-04
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 36 0.006
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 1.2
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.7
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 2.7
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 4.7
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 6.3
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 25 8.3
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch... 25 8.3
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 25 8.3
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 39.1 bits (87), Expect = 6e-04
Identities = 25/100 (25%), Positives = 50/100 (50%)
Frame = +1
Query: 265 QARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTF 444
+A+V Q+ S+++SEL A + P + +++Q + A++ + D L ++T+
Sbjct: 90 KAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTY 149
Query: 445 LVTERITLADVIVFSTLLHAFRTC*TPSVRSSLINVQRWF 564
LV R+TLAD+ L T S + ++ R++
Sbjct: 150 LVGSRLTLADIFFTCFLKFGATYVLTKSYLAKYTHIYRYY 189
Score = 31.9 bits (69), Expect = 0.095
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 119 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN 235
N D KFP K+P F DG L+E+ AIA+Y+A+
Sbjct: 38 NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLAS 75
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 35.9 bits (79), Expect = 0.006
Identities = 23/102 (22%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Frame = +1
Query: 265 QARVWQWASWSDSELL-PASCA-WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTR 438
+A + +W + + +++ P + WV + G + + ++ + + + + +LK+ + + R
Sbjct: 93 EAEMLKWMCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDR 152
Query: 439 TFLVTERITLADVIVFSTLLHAFRTC*TPSVRSSLINVQRWF 564
T+LV +R TLAD+ S L F + R L ++ R++
Sbjct: 153 TYLVGDRFTLADLFFGSLLRIFFNSIIDEKTRKELPHLTRYY 194
Score = 30.3 bits (65), Expect = 0.29
Identities = 24/73 (32%), Positives = 31/73 (42%)
Frame = +2
Query: 8 GVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADG 187
G LY++ N R L A+ V + + S D KFP K+P F ADG
Sbjct: 4 GTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIGADG 60
Query: 188 KVLLTESNAIAYY 226
L+E AI Y
Sbjct: 61 -FELSEVIAIVKY 72
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 392 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 484
TY PP Y D+FS APS+ + S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +2
Query: 26 PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 205
P F++ KA + QY+ +FG +K ++F K+ ++ F S + +L+
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611
Query: 206 SN 211
SN
Sbjct: 612 SN 613
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 254 VWLPKPVSGSGHHGLTVNYCL-LPVLGSSLTLV 349
+W+P PV SG T+ C+ LP G +T V
Sbjct: 23 LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 195 STFPSALSNAGTFPAGNFFKKSSDL 121
+TFP A + GTFP G F S L
Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 302 VNYCLLPVLGSSLTLVSCNSTNRML 376
V + L+P LG L + SCN+ R L
Sbjct: 259 VTHALVPELGLQLAMASCNALLRYL 283
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 257 WLPKPVSGSGHHGLTVNYCLLPV 325
+LP +SG G+ L+V Y +PV
Sbjct: 308 FLPAIISGMGYTSLSVQYMTIPV 330
>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 272
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 601 RRPNTCGWWATVRTNAERLSATNGRSGSST 512
RR N G WA +N S + GRS S+
Sbjct: 82 RRNNHVGRWANRHSNVSSSSGSRGRSSVSS 111
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/74 (22%), Positives = 29/74 (39%)
Frame = +2
Query: 107 FGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGVWLPKPVSGSG 286
FG + K + G F D ++L + ++ S+ GG+ L +SG+
Sbjct: 55 FGHSRKGGPKKQGCTGGWSLVFPDLDYQILRASDTELPLFLWGHSMGGGLALRYGISGTH 114
Query: 287 HHGLTVNYCLLPVL 328
H L P+L
Sbjct: 115 RHKLAGVIAQAPML 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,934
Number of Sequences: 5004
Number of extensions: 67368
Number of successful extensions: 201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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