Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30190
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   4.1  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   4.1  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   4.1  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   4.1  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   7.2  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   9.5  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    25   9.5  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 159 YTLLFSHKLMNFQLMRSLFFSLPSPYASLSFAGSRVGPSF 40
           Y+L+FSH L++         SL S +    +  S VG SF
Sbjct: 652 YSLIFSHSLLDLTFQYVDIASLLSQFLLCVYDPSNVGHSF 691


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 235 CY--IRHQHADTTR-EQWFLQPTKYENDVLFFIYNREY 339
           CY  +R Q +DTT  +  FL+     N +LF +Y ++Y
Sbjct: 853 CYRNLRIQASDTTVIDTLFLESWSILNHILFHVYKKKY 890


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +1

Query: 295 KYENDVLFFIYNREYNDALKLGRIVDASGD 384
           +  NDV  + ++++ N+  K+G++VDA G+
Sbjct: 339 RVNNDVEAYQWSQKENEWKKIGQVVDAVGN 368


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 434 PKGGRPATSPSCPNAIRSPE 375
           P   RP+T PSCPNA  SP+
Sbjct: 298 PIDARPST-PSCPNASISPK 316


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 159 YTLLFSHKLMNFQLMRSLFFSLPSPYAS 76
           ++ ++SH L +F L+   FF +P+  +S
Sbjct: 388 FSCVWSHSLDSFSLIEKTFFDVPTNMSS 415


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 431 KGGRPATSPSCPNAIRSPEASTILPSFK 348
           +GGR +T+PS PN +    ++   P  +
Sbjct: 493 QGGRSSTAPSTPNKVLPAASAKAAPKLQ 520


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +2

Query: 2   FVKLIYRNYNLALKLGPTLDPANERLAYGDGK-EKNSDLISWKFINLWENNRVYFKIHNT 178
           FV     N N  +  G ++ P  +   Y D K E N D +S   +NL +         NT
Sbjct: 159 FVASSSMNANPLINSGNSISPFAD---YNDPKPEANEDYLS---LNLGDGA-------NT 205

Query: 179 KYNQYLKLSSTTDCNTQDRV 238
           +Y Q   L S TD  +Q R+
Sbjct: 206 RYEQMALLESQTDTYSQQRM 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,115
Number of Sequences: 5004
Number of extensions: 38622
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)