Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30190
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1082 - 8847795-8848033,8848511-8848724 32 0.33
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493... 30 1.0
04_04_1313 - 32572594-32573793,32573827-32573832 29 1.8
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657 28 4.1
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584... 28 4.1
08_01_1081 + 11058119-11059756 28 5.4
12_02_0877 - 23946449-23948284 27 9.5
06_01_0198 + 1529190-1530371 27 9.5
03_06_0048 - 31274899-31277193 27 9.5
01_02_0027 - 10331614-10331737,10332435-10332526,10332977-103330... 27 9.5
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 277 WFLQPTKYENDVLFFIYNREYNDALKLG 360
W T Y DVL F YN+EY+D +G
Sbjct: 59 WLAGKTFYAGDVLVFKYNKEYHDVAVVG 86
>06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,
4938003-4938059,4938145-4938300,4938402-4938486,
4938727-4938817,4938896-4939060,4939150-4939345,
4939593-4939731,4940187-4941874,4942575-4942765,
4942850-4942994
Length = 1055
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +1
Query: 211 D*LQHSRPCY--IRHQHADTTREQWFLQPTKYENDVLFFIYN--REYNDALKLGRIVDAS 378
D L+H C I+ Q D R W L +END+L + E+ +K +I+ A+
Sbjct: 964 DELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWEEFVGCVKSIKILSAA 1023
Query: 379 GDRMAFGHDGEVAGLPP 429
+ DG++ G+PP
Sbjct: 1024 -EVQQMSLDGDLGGVPP 1039
>04_04_1313 - 32572594-32573793,32573827-32573832
Length = 401
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 442 FXPQRGEDQLLHHR-VQMPYGLPKRPQSYRASK 347
F P+ G ++ + H+ +M + L K+P+ +RASK
Sbjct: 348 FVPESGGNECVEHKKYKMEFSLDKQPKDHRASK 380
>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
Length = 1032
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 319 FIYNREYNDALK--LGRIVDASGDRMAFGHDGEVAGLPPFGGKTPKSSLVVHFLDNQRQR 492
F+ Y+DA L +VDA G++ + +V G+PP + + + +N R++
Sbjct: 505 FVAPVHYSDANADLLLHVVDAGGEQDTVAANVDVLGIPPAPASITNAIVKSVWRENYREQ 564
Query: 493 FMLMNMKIN 519
F L+ +N
Sbjct: 565 FKLVVDALN 573
>01_01_0758 +
5843702-5843874,5844021-5844083,5844174-5844290,
5847180-5847945
Length = 372
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 32 LALKLGPTLDPANERLAYGDGKEKNSDLISWKFINLWENNRVYFKIHNTKYNQYLKLSS 208
+AL GP L P N A+G G E S + + W + + N ++ ++ L S
Sbjct: 146 IALYSGPALSPLNHHRAFGGGAESGSSGAATR--ARWVTGTLLMLLSNVTWSLWIVLMS 202
>08_01_1081 + 11058119-11059756
Length = 545
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -1
Query: 446 GVXPPKGGRPATSPSCPNAIRSPEASTILPSFK 348
G PP RPATS SC A+ + LP K
Sbjct: 78 GDRPPPKKRPATSGSCSGAVDDDSSPPSLPPKK 110
>12_02_0877 - 23946449-23948284
Length = 611
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 493 SVASDCLESVRPEKIWGFXPQRGEDQLLHHRVQMPYGLPK 374
+ AS +VRP WG QR + H +P GLP+
Sbjct: 5 TAASSSASAVRPPPTWGAPSQR--RLVEQHLASLPRGLPR 42
>06_01_0198 + 1529190-1530371
Length = 393
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 101 FPYHRRMQVSRSRDQEWGRA 42
F +++R+ VSRS D E+GRA
Sbjct: 286 FCWYQRLHVSRSPDTEYGRA 305
>03_06_0048 - 31274899-31277193
Length = 764
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -3
Query: 117 MRSLFFSLPSPYASLSFAGSRVG 49
MR+ S P+P AS+ FAG++VG
Sbjct: 461 MRAYALSDPNPTASIVFAGTQVG 483
>01_02_0027 -
10331614-10331737,10332435-10332526,10332977-10333055,
10333110-10333408,10335310-10335588
Length = 290
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 46 RPHS*SRERETCIRRW*G 99
R HS RER+ C+R+W G
Sbjct: 26 RLHSGERERKLCVRKWMG 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,433,663
Number of Sequences: 37544
Number of extensions: 257882
Number of successful extensions: 857
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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