Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30190
         (536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)                      29   1.8  
SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)                   28   4.2  
SB_25482| Best HMM Match : PP2C (HMM E-Value=2.4e-24)                  28   5.6  
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)                     28   5.6  
SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)
          Length = 249

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 32 LALKLGPTLDPANERLAYGD 91
          +++KL P +DP   RLAYGD
Sbjct: 6  ISVKLPPDIDPTKARLAYGD 25


>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 460

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +1

Query: 289 PTKYENDVLFFIYNREYNDALKLGRIVDASGDRMAFGHDGEVAGLPPFGGKTPKSSLVVH 468
           P K   +V F   +  + +  K   + DAS     FG  G           T  SSL   
Sbjct: 243 PHKIFPEVAFEDLSASFKNLYK--SVFDASQSTSGFGSMGTTTSSEISPAPTGASSLSSS 300

Query: 469 FLDNQRQRFMLMNMK 513
              NQ+Q+F++ NM+
Sbjct: 301 LPQNQQQQFIMQNME 315


>SB_25482| Best HMM Match : PP2C (HMM E-Value=2.4e-24)
          Length = 316

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 409 EVAGLPPFGGKTPKSSLVVHFLDNQRQRFMLMNMKIN 519
           E+ GLPP GG   K+  +   L+   Q+    N K+N
Sbjct: 181 EIQGLPPGGGLASKAGFIQGILEKLVQQKCPENCKVN 217


>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 237 LYSAPTRRHHQGAVVPPAHEVRKRRPV 317
           +YS    + H  A+V P+H+V KRRPV
Sbjct: 24  MYSESNNKSH--AIVFPSHDVVKRRPV 48


>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
          Length = 439

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 249 PTRRHHQGAVVPPAHEVRKRRPVLHLQSRVQRCFE 353
           PTR+   G V+P     R+     H +++V +C++
Sbjct: 241 PTRQRTSGKVLPTRKRTRRLSVTYHAKNQVVKCYQ 275


>SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 8    KLIYRNYNLALKLGPTLDPANERLAYGDGKEKNSDLISWK 127
            KL+Y N +   KL  TL    E  A  DG  K +   +WK
Sbjct: 1040 KLLYNNISNFAKLASTLVHLGEYQAAVDGARKANSTKTWK 1079


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,337,827
Number of Sequences: 59808
Number of extensions: 296708
Number of successful extensions: 877
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)