Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30190
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28741-3|AAA68327.2|  410|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AC006675-3|AAK84550.1|  335|Caenorhabditis elegans Serpentine re...    28   4.9  
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AL034488-4|CAA22449.1|  497|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U28741-3|AAA68327.2|  410|Caenorhabditis elegans Hypothetical
           protein F35D2.1 protein.
          Length = 410

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 246 APTRRHHQGAVVPPAHEVRKRRPV 317
           AP  RH  GAV PP+ ++R  RP+
Sbjct: 295 APVHRH-MGAVYPPSQQIRMGRPI 317


>U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical
           protein F35A5.2 protein.
          Length = 111

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +1

Query: 295 KYENDVLFFIYNREYND 345
           KY N    F YNREYND
Sbjct: 29  KYNNPPFCFAYNREYND 45


>AC006675-3|AAK84550.1|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein35 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 353 SSVGLWTLRETVWHL-DTMVK*LVFPPLGXKPPNLLWSYTF*TIRGNAS 496
           + +GLWT+  TVW L +   + L     G   P+ LW  T     G+ S
Sbjct: 146 AGIGLWTIPTTVWGLPNQYTEKLSIVSSGKFYPDCLWDSTVVVTSGSDS 194


>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = -2

Query: 478 CLESVRPEKIWG----FXPQRGEDQLLHHR 401
           CL  + PEK++     +     EDQL+HHR
Sbjct: 529 CLHGIVPEKLYNEMQKYLASTTEDQLVHHR 558


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = -2

Query: 478 CLESVRPEKIWG----FXPQRGEDQLLHHR 401
           CL  + PEK++     +     EDQL+HHR
Sbjct: 529 CLHGIVPEKLYNEMQKYLASTTEDQLVHHR 558


>Z46343-4|CAA86460.1|  336|Caenorhabditis elegans Hypothetical
           protein T23F11.5 protein.
          Length = 336

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -3

Query: 207 ELSFKYWLYLVLWILKYTLLFSHKLMNFQLMRSLFFSLPSPYASLSF 67
           + S+   L L+ +I++ TLL  + ++NF ++R   FS  + +   SF
Sbjct: 22  DTSYDSGLELLKYIIQVTLLSINFILNFLIIRVTMFSKNNDFRENSF 68


>AL034488-4|CAA22449.1|  497|Caenorhabditis elegans Hypothetical
           protein Y54G11A.4 protein.
          Length = 497

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 220 QHSRPCYIRHQHADTTREQWFLQPTKYENDVLFFIYNREYNDALKL 357
           +H       ++  D  R+ W L    Y +  LF I + EY  AL++
Sbjct: 229 RHKEGKEFMYKTEDDWRQGWMLAAHNYWHTALFHIESAEYEPALEI 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,264,154
Number of Sequences: 27780
Number of extensions: 218296
Number of successful extensions: 677
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)