Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30190
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.1  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.0  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 417 SYFTIVSKCHTVSRSVHNPTELQSIVVLAIVDEEQDVVFV 298
           S  T+V  C     S  + T++ S+++ ++    QD+VF+
Sbjct: 124 SKLTLVLSCAMKFESYPHDTQICSMMIESLSHTTQDLVFI 163


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 134 NLWENNRVYFKIHNTKYNQYLKL 202
           N   NN   +  +N  YN Y KL
Sbjct: 95  NYNNNNYNNYNYNNNNYNNYKKL 117


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 428 PLGXKPPNLLWSYTF*TIRGNASCL 502
           P G  P N+ WSY    + G++  L
Sbjct: 608 PTGDLPLNIRWSYPGEEMGGSSGVL 632


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,646
Number of Sequences: 438
Number of extensions: 2919
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)