Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30190
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    28   4.5  
At2g41660.1 68415.m05147 expressed protein contains Pfam profile...    27   6.0  
At4g08670.1 68417.m01428 protease inhibitor/seed storage/lipid t...    27   7.9  
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ...    27   7.9  
At1g24090.1 68414.m03039 RNase H domain-containing protein very ...    27   7.9  

>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 437 PPKGGRPATSPSCPNAIRSPEASTILPS 354
           P  GG P +SP+ P+   SP + +I PS
Sbjct: 501 PTPGGSPPSSPTTPSPGGSPPSPSISPS 528



 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 437 PPKGGRPATSPSCPNAIRSPEASTILPS 354
           P  GG P +SP+ P    SP +S   PS
Sbjct: 488 PTPGGSPPSSPTTPTPGGSPPSSPTTPS 515


>At2g41660.1 68415.m05147 expressed protein contains Pfam profile
           PF04759: Protein of unknown function, DUF617
          Length = 297

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 419 PATSPSCPNAIRSPEASTILPS 354
           P TSP+  + +RSP +S ++PS
Sbjct: 22  PVTSPARSSHVRSPSSSALIPS 43


>At4g08670.1 68417.m01428 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 208

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 434 PKGGRPATSPSCPNAIRSPEASTILPS 354
           P  G P TSPS   A +SPE S   PS
Sbjct: 142 PSAGAPTTSPS---AAKSPETSATSPS 165


>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
           identical to WIP5 protein [Arabidopsis thaliana]
           gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 337

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 163 QDPQH*VQPVLETKFDD*LQHSRPCYIRHQHADTTREQWFLQPTKYENDVLFFIYNREYN 342
           QD    V+  +E+  DD   H    +  H +   T  Q  + PT++   + F  +NR YN
Sbjct: 133 QDHDRGVEVTVESHLDDDDDHHGDLHRGHHYWIPTPSQILIGPTQFTCPLCFKTFNR-YN 191

Query: 343 D 345
           +
Sbjct: 192 N 192


>At1g24090.1 68414.m03039 RNase H domain-containing protein very low
           similarity to GAG-POL precursor [Oryza sativa (japonica
           cultivar-group)] GI:5902445; contains Pfam profiles
           PF00075: RNase H, PF04134: Protein of unknown function,
           DUF393
          Length = 535

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 420 TSYFTIVSKCHTVSRSVHNPTELQSIVVLAIVDEEQDVVFVLR 292
           +S F I S     SRS    +++ S  V++ VD+E+D  FV+R
Sbjct: 46  SSVFGICSVHSYSSRSKAVKSKMLSSTVVSAVDKEKDAFFVVR 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,680,797
Number of Sequences: 28952
Number of extensions: 203123
Number of successful extensions: 582
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)