Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30189
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of RNA-me...    29   0.80 
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    28   1.8  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    27   4.3  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    27   4.3  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    27   4.3  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   5.6  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   5.6  
SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit S8|S...    26   5.6  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   5.6  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   9.8  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    25   9.8  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   9.8  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   9.8  

>SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of
           RNA-mediated gene silencing |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 623 PNIGKPPCLVVLPARYCSPAICLPIVECLSIIFKAFIE 510
           P IG   C  V+ + YC+P  C  I ECL+ + +  I+
Sbjct: 78  PTIGS--CFAVVESGYCTPKNCKIIQECLAGLVELTID 113


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 200 DMGHAGHEHHGIDHSRH 250
           D  H  H+HHG DH  H
Sbjct: 21  DYDHHNHDHHGHDHHSH 37



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 209 HAGHEHHGIDHSRHIATKCLLMDFLIHH 292
           H GH+HH  D S + +++   + F+  H
Sbjct: 29  HHGHDHHSHDSSSNSSSEAARLQFIQEH 56



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 307 HNTDMNDHNVHTFSGHGDHSSHN 375
           H+T   DH+ H   GH DH SH+
Sbjct: 17  HHTHDYDHHNHDHHGH-DHHSHD 38


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 456 NRSCEFVGSFFAIFYYSLLYEGLKYYRKAF 545
           N   +F GS   IF++++  EGL   ++ F
Sbjct: 50  NTGNKFAGSIIGIFFFAVAIEGLSLVQRMF 79


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 165 TRWTNIMNTTIWIWAMLGMNTM 230
           T W  ++N T WI+++L  N +
Sbjct: 227 TNWLGLLNGTGWIYSLLNQNVL 248


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 606 GFANIWCSRWTTNCSSQFPPYGLKRNVPTMMEHST--RHGKRY 728
           G  NI C R++    S+     LK NVP +   ST   HG  Y
Sbjct: 29  GLRNILCRRYSPLALSKEVTEALKNNVPVVALESTIITHGMPY 71


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -2

Query: 400 RETSWTCPYCGYCDHHGLKKCGHC 329
           R   W CP CG+ +      C  C
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRC 366


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -2

Query: 481 DPTNSQLLLRPPERKK--NFXRVFFQCSHRETSWTCPYCG 368
           D TNS     PP  KK   +   F Q +   + WTC  CG
Sbjct: 207 DNTNSN----PPRCKKCRGYINPFIQFTMASSKWTCNLCG 242


>SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit
           S8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -1

Query: 710 CAVLHHRGNISFQAIWRELAGTIGGPSAAPNI 615
           CAVL+H+G +S  +I R   G I GP A P I
Sbjct: 33  CAVLYHQGFLS--SIQR---GDIHGPDALPTI 59


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 226 PWD*SFKTYSHQMPIN-GLLNSSYNRIVHNTDMNDH 330
           PW     T + + P +   L +SYN   H+ D N+H
Sbjct: 594 PWVKKIDTLAAEFPAHTNYLYTSYNASSHDIDFNEH 629


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 536  KGILLWEDILQDYSIVPVAPPDKGVCQYLVQQ 631
            K +++W+++  DY  V    PD  + Q+ +Q+
Sbjct: 1051 KNLIMWDEVKADYEWVKYQIPDIMLSQFDLQE 1082


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +2

Query: 614 QYLVQQMDHQLFQPIPSIWLEKKCSHDDGAQHT 712
           QY +   D Q F PI S      C HD  A  T
Sbjct: 238 QYFIGDFDGQTFTPIDSASRILDCGHDCYATQT 270


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 250 YSHQMPINGLLNSSYNRIVHNTDMNDHNVHT 342
           Y    P+N +LN S  R++H     + N+HT
Sbjct: 393 YEENDPMNPILNGSVVRLIH--PFTNRNLHT 421


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 400 RETSWTCPYCGYCDHHGLKKCGHC 329
           R    TCP CGY D  G  +C  C
Sbjct: 357 RYVEGTCPKCGYDDARG-DQCDGC 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,906,102
Number of Sequences: 5004
Number of extensions: 91638
Number of successful extensions: 237
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)