Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30189
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0457 - 3532604-3532971,3533072-3534019,3534304-3534331           31   1.5  
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200...    30   1.9  
10_08_0861 - 21139173-21139613                                         30   1.9  
04_03_0119 + 11485753-11486202                                         29   4.5  
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427...    29   5.9  
02_01_0580 + 4303020-4303211,4303838-4303879,4304538-4304646,430...    29   5.9  
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591...    28   7.8  

>11_01_0457 - 3532604-3532971,3533072-3534019,3534304-3534331
          Length = 447

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = +1

Query: 334 VHTFSGHGDHSSHNMGMSMTFHGGYIEKKPFXNFFSSLVDVTEVVNLWDHFLQYFIIACS 513
           V+ F G GD  +         +  Y+         S +VDV++ +    H  Q  I+ C 
Sbjct: 213 VYEFMGRGDLHALLHSAQNDENTSYLNHITLAQRISIVVDVSDALEYLHHNNQGTIVHCD 272

Query: 514 MKALNIIERHSTMGRHIA--GL-QYRAGSTT 597
           +K  NI+     M  H+A  GL +++ GS+T
Sbjct: 273 LKPSNIL-LDDDMIAHVADFGLARFKTGSST 302


>11_04_0236 +
           15215386-15216197,15216854-15218888,15219131-15220017,
           15222420-15226194
          Length = 2502

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 406 YIEKKPFXNFFSSLVDVTEVVNLWDHFLQ---YFIIACSMKALN 528
           Y++KK F N ++ ++D  +++N    FLQ   YFI+   +  +N
Sbjct: 240 YLDKKKFTNSYTLMLDEKQLINELQEFLQNKRYFIVIDGLWDIN 283


>10_08_0861 - 21139173-21139613
          Length = 146

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 227 GVHAQHGPYPYCG-VHDVRPSSTGLRRCTAIKPKKLSTFVNINLNCELR 84
           GV+  HGPY  C  +  +  +   +  CTA+K   L   VN+N+  EL+
Sbjct: 84  GVNVGHGPYDCCPLLAGLADADAAVCLCTAVKANVLG--VNLNVPVELK 130


>04_03_0119 + 11485753-11486202
          Length = 149

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 221 HAQHGPYPYCGVHDVRPSSTGLRRCTAIKP 132
           H++ G YP+C      P S+    CTA+ P
Sbjct: 66  HSRGGMYPWCSSPASPPPSSATSTCTALSP 95


>12_02_0588 -
           20842209-20842337,20842464-20842560,20842620-20842733,
           20843140-20843749,20844739-20845462,20845542-20845620,
           20845783-20845865,20846148-20846226,20846332-20846420,
           20846499-20846591,20847288-20847337,20847417-20847600,
           20849227-20849542,20849626-20849657
          Length = 892

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
 Frame = -2

Query: 394 TSWTCPYCGYC-------DHHGLKKCGHCDHSYLCCAQ 302
           +SW CP C  C       D + L  C  CD +Y C  Q
Sbjct: 183 SSWVCPSCRSCEVCRRPGDPNKLMFCKRCDGAYHCYCQ 220


>02_01_0580 +
           4303020-4303211,4303838-4303879,4304538-4304646,
           4304731-4304859,4305002-4305121,4305223-4305343,
           4305888-4306044,4306377-4306427,4306573-4306695
          Length = 347

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
 Frame = -3

Query: 732 ESTVCH--AVCCAPSSWEHFFSSH---MEGIGWNNWWSICCTKYWQTPLSGGATGTIL*S 568
           E  +CH   + C  S+     S +   + G+ W  +WS    ++W T     ATG +L  
Sbjct: 121 EQAICHRMVLVCGTSTCHMAVSKNKLFIPGV-WGPFWSAMVPEFWLTEGGQSATGALL-D 178

Query: 567 CNMSSHSRMPFY-NI*GLHRASYNKILQKMI 478
             + +H   P   N     R S  ++L K++
Sbjct: 179 YIVENHVAAPLLANHAASQRISIYELLNKIL 209


>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
            33659197-33659356,33660032-33660081,33662237-33662290,
            33662630-33662704,33662821-33662949,33663065-33663152,
            33663266-33663372,33663513-33663561,33663657-33663760,
            33663941-33663980,33664409-33664659,33664674-33664686,
            33665846-33666355,33666437-33667657,33667973-33668221,
            33668305-33668531
          Length = 1194

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 403  GYIE-KKPFXNFFSSLVD--VTEVVNLWDHFLQYFIIACSMKALNIIERHST 549
            GY+E ++P  N    +V   + E   LW+  L+  ++A    AL  +E H+T
Sbjct: 1130 GYLEDRRPASNMDPYVVTALLAETTILWEPTLEAEVLAAKKLALKFLENHAT 1181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,264,567
Number of Sequences: 37544
Number of extensions: 637659
Number of successful extensions: 1731
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1730
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)