Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30189
         (821 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18253| Best HMM Match : ADAM_spacer1 (HMM E-Value=4e-05)            29   4.6  
SB_11387| Best HMM Match : MFS_1 (HMM E-Value=4.4e-06)                 28   8.0  

>SB_18253| Best HMM Match : ADAM_spacer1 (HMM E-Value=4e-05)
          Length = 339

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 266 GIWWL-YVLNDQSHGVHAQHGPYPYCGVHDVRPSSTGL 156
           G+W   +VL D   G+ A HGPYP C + D+   +T +
Sbjct: 104 GLWDRGHVLRDT--GLDAGHGPYPGCKMFDLPAGATNV 139


>SB_11387| Best HMM Match : MFS_1 (HMM E-Value=4.4e-06)
          Length = 815

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 690 WEHFFSSHMEGIGWNNWWSICCTKYWQ-TPLSGGAT 586
           W  F    +EG+ +   WS C T     TP+SG AT
Sbjct: 479 WLAFPLEFLEGLTYGTSWSTCVTYMADATPMSGAAT 514


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,517,417
Number of Sequences: 59808
Number of extensions: 704840
Number of successful extensions: 2474
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2464
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)