Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30189
         (821 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80441-7|AAB37655.1|  252|Caenorhabditis elegans Hypothetical pr...    33   0.25 
U80441-6|AAT68894.1|  256|Caenorhabditis elegans Hypothetical pr...    33   0.25 
AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical ...    32   0.43 
AL023835-4|CAD56254.1|  564|Caenorhabditis elegans Hypothetical ...    32   0.57 
AL023835-3|CAD56253.1|  566|Caenorhabditis elegans Hypothetical ...    32   0.57 
AL023835-2|CAA19487.2|  592|Caenorhabditis elegans Hypothetical ...    32   0.57 
U67953-3|AAL13328.1|  321|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AY519857-1|AAR89638.1|  444|Caenorhabditis elegans nematode poly...    29   5.3  
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly...    29   5.3  
AF106581-3|AAO25985.1|  399|Caenorhabditis elegans Nematode poly...    29   5.3  
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly...    29   5.3  
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly...    29   5.3  
Z81068-9|CAB82207.1|   62|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U50135-6|AAN63429.1|  925|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AC006651-3|AAU20844.1|  123|Caenorhabditis elegans Hypothetical ...    28   9.3  

>U80441-7|AAB37655.1|  252|Caenorhabditis elegans Hypothetical
           protein F27C1.2a protein.
          Length = 252

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +1

Query: 316 DMNDHNVHT----FSGHGDHSSHNMGMSMTFHGGYIE 414
           D N+H+ H+     +GHG H  H   M M FHGG+ E
Sbjct: 52  DQNEHHEHSSHGSHAGHGGHEGHM--MKMWFHGGFEE 86


>U80441-6|AAT68894.1|  256|Caenorhabditis elegans Hypothetical
           protein F27C1.2b protein.
          Length = 256

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +1

Query: 316 DMNDHNVHT----FSGHGDHSSHNMGMSMTFHGGYIE 414
           D N+H+ H+     +GHG H  H   M M FHGG+ E
Sbjct: 52  DQNEHHEHSSHGSHAGHGGHEGHM--MKMWFHGGFEE 86


>AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical
           protein Y48G1A.3 protein.
          Length = 388

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 382 CPYCGYCDHHGLKK-CGHCDHSYLCCAQFCYMMN*EVH 272
           C +C  C H G KK C  C  +Y  C+Q C   +  +H
Sbjct: 318 CQFCSVCGHPGAKKRCTQCKLAY--CSQECQKFDWPIH 353


>AL023835-4|CAD56254.1|  564|Caenorhabditis elegans Hypothetical
           protein Y37A1B.2d protein.
          Length = 564

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +2

Query: 548 LWEDILQDYSIVPVAP-PDKGVC-QYLVQQMDHQLFQPIPSIWLEKKCSHDDGAQHTAWQ 721
           L E +   Y ++P+ P P+K V  +Y    +DH+  + I  +W+ K C H   +Q   W 
Sbjct: 270 LHEQLSAKYVLIPIPPLPEKQVAGRYEEDLIDHR--KHILQLWVNKICRHPVLSQSEVWL 327

Query: 722 TVLS 733
             +S
Sbjct: 328 HFIS 331


>AL023835-3|CAD56253.1|  566|Caenorhabditis elegans Hypothetical
           protein Y37A1B.2c protein.
          Length = 566

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +2

Query: 548 LWEDILQDYSIVPVAP-PDKGVC-QYLVQQMDHQLFQPIPSIWLEKKCSHDDGAQHTAWQ 721
           L E +   Y ++P+ P P+K V  +Y    +DH+  + I  +W+ K C H   +Q   W 
Sbjct: 272 LHEQLSAKYVLIPIPPLPEKQVAGRYEEDLIDHR--KHILQLWVNKICRHPVLSQSEVWL 329

Query: 722 TVLS 733
             +S
Sbjct: 330 HFIS 333


>AL023835-2|CAA19487.2|  592|Caenorhabditis elegans Hypothetical
           protein Y37A1B.2b protein.
          Length = 592

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +2

Query: 548 LWEDILQDYSIVPVAP-PDKGVC-QYLVQQMDHQLFQPIPSIWLEKKCSHDDGAQHTAWQ 721
           L E +   Y ++P+ P P+K V  +Y    +DH+  + I  +W+ K C H   +Q   W 
Sbjct: 298 LHEQLSAKYVLIPIPPLPEKQVAGRYEEDLIDHR--KHILQLWVNKICRHPVLSQSEVWL 355

Query: 722 TVLS 733
             +S
Sbjct: 356 HFIS 359


>U67953-3|AAL13328.1|  321|Caenorhabditis elegans Hypothetical
           protein ZC13.2 protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 382 CPYCGYCDH-HGLKKCGHCDHSYLCCAQ 302
           C +  Y D+ HG KKC  C    LCC +
Sbjct: 262 CGWVKYIDYMHGKKKCSICSLFSLCCGK 289


>AY519857-1|AAR89638.1|  444|Caenorhabditis elegans nematode
           polyprotein allergen related,post-translationnally
           cleaved, the diverse 14.5 kDa cleavageproducts bind
           lipids and retinol (51.7 kD) protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +1

Query: 325 DHNVHT-FSGHGDHSSHNMGMSMTFHGGYIEK 417
           DH  H    GHGDHS HN       H   IEK
Sbjct: 141 DHASHEGHEGHGDHSGHNHHHIKRRHLAVIEK 172


>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
            polyprotein allergen related,post-translationnally
            cleaved, the diverse 14.5 kDa cleavageproducts bind
            lipids and retinol (164.6 kD) protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +1

Query: 325  DHNVHT-FSGHGDHSSHNMGMSMTFHGGYIEK 417
            DH  H    GHGDHS HN       H   IEK
Sbjct: 1137 DHASHEGHEGHGDHSGHNHHHIKRRHLAVIEK 1168


>AF106581-3|AAO25985.1|  399|Caenorhabditis elegans Nematode
           polyprotein allergen relatedprotein 1, isoform b
           protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +1

Query: 325 DHNVHT-FSGHGDHSSHNMGMSMTFHGGYIEK 417
           DH  H    GHGDHS HN       H   IEK
Sbjct: 96  DHASHEGHEGHGDHSGHNHHHIKRRHLAVIEK 127


>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
           polyprotein allergen relatedprotein 1, isoform c
           protein.
          Length = 1198

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +1

Query: 325 DHNVHT-FSGHGDHSSHNMGMSMTFHGGYIEK 417
           DH  H    GHGDHS HN       H   IEK
Sbjct: 895 DHASHEGHEGHGDHSGHNHHHIKRRHLAVIEK 926


>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
            polyprotein allergen relatedprotein 1, isoform a protein.
          Length = 1440

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +1

Query: 325  DHNVHT-FSGHGDHSSHNMGMSMTFHGGYIEK 417
            DH  H    GHGDHS HN       H   IEK
Sbjct: 1137 DHASHEGHEGHGDHSGHNHHHIKRRHLAVIEK 1168


>Z81068-9|CAB82207.1|   62|Caenorhabditis elegans Hypothetical
           protein F25H5.8 protein.
          Length = 62

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 608 PPCLVVLPARYCSPAICLPIVECLSIIFKAFIEQAIIKYCK 486
           PP  V    + C   +C+ +V  + +IF A+I    + Y +
Sbjct: 19  PPLAVWYKEKTCGVGVCINVVLYILLIFPAYIHAVYVCYIR 59


>U50135-6|AAN63429.1|  925|Caenorhabditis elegans Hypothetical
           protein C52E12.1 protein.
          Length = 925

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -2

Query: 466 QLLLRPPERKKNFXRVFFQCSHRETSWTCPYCGYCDHHGLKKCGHCDHSYLCCAQFCYMM 287
           Q  L    R ++  +  F C   E+  T     +  H GLKK  + +H Y+C  + C  M
Sbjct: 262 QKFLDEENRYRHLRKDHFFCQFCESDGTMTNVFFGKHDGLKK-HYKEHHYICETEECREM 320


>AC006651-3|AAU20844.1|  123|Caenorhabditis elegans Hypothetical
           protein H06I04.6 protein.
          Length = 123

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -2

Query: 496 NIAKNDPTNSQLLLRPPER-KKNFXRVFFQCSHR--ETSWTCPYCGYC 362
           N  +  P ++ +   P E   + F  V+FQ + R  E +W C Y  YC
Sbjct: 38  NYYRQSPGHTNMCRMPIESGDQQFGNVYFQDNSRPREITWGCGYYEYC 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,028,690
Number of Sequences: 27780
Number of extensions: 542259
Number of successful extensions: 1363
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)