Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30189
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              24   2.0  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              24   2.0  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   3.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.0  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +1

Query: 466 VNLWDHFLQYFIIACSMKALNIIERHSTMGRHIA 567
           +N+ D  +Q +I  C+MK  + +++      H++
Sbjct: 52  INIEDENVQLYI-ECAMKKFSFVDKDGNFNEHVS 84


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -2

Query: 391 SWTCPYCGYCDH--HGLKKC 338
           ++TCP CG C    H +K C
Sbjct: 72  AYTCPICGACGDIAHTVKYC 91


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 451 DVTE-VVNLWDHFLQYFIIACSMKALNIIERHSTMGRHIAGLQYRA 585
           D+ E  +N+ D  +  FI  C+MK  N+++ ++     I+    RA
Sbjct: 46  DINEGKINMDDENVLLFI-ECTMKKFNVVDENANFNEKISSDIVRA 90


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = +1

Query: 253 SHQMPINGLLNSSYNRIVHNTDMNDHNVH 339
           S++  +N     S+  ++HN  +N  ++H
Sbjct: 559 SNEQFLNTAATLSFCEMIHNAQVNKRSIH 587


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 267,368
Number of Sequences: 438
Number of extensions: 6779
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)