Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30189
         (821 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65430.1 68414.m07423 zinc finger protein-related contains we...    31   1.2  
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam...    29   3.7  
At1g67440.1 68414.m07676 expressed protein contains Pfam domain ...    28   6.5  
At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protei...    28   6.5  
At3g08020.1 68416.m00979 PHD finger protein-related contains low...    28   8.6  
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ...    28   8.6  

>At1g65430.1 68414.m07423 zinc finger protein-related contains weak
           similarity to zinc finger proteins and a Pfam:PF01485
           IBR domain
          Length = 567

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = -2

Query: 460 LLRPPERKKNFXRVFFQC---SHRETSWTCPYCGYCDH--HGLKKCGHCDHSYLCCAQFC 296
           LL P + K+ +   F +     +R+T W CP  G CD+  + +   G+ D +  CC  FC
Sbjct: 189 LLAPDKDKQKYTSYFVRSYVEDNRKTKW-CPAPG-CDYAVNFVVGSGNYDVNCRCCYSFC 246

Query: 295 YMMN*EVH 272
           +    E H
Sbjct: 247 WNCAEEAH 254


>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
           profile PF00628: PHD-finger
          Length = 696

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
 Frame = -2

Query: 394 TSWTCPYCGYCDHHGL----KK---CGHCDHSYLCCAQ 302
           +SW CP C  C+  G     KK   C  CD +Y C  Q
Sbjct: 206 SSWACPSCRICEGCGTLGDPKKFMFCKRCDDAYHCDCQ 243


>At1g67440.1 68414.m07676 expressed protein contains Pfam domain
           PF03193: Protein of unknown function, DUF258
          Length = 433

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 316 DMNDHNVHTFSGHGDHSSHNMGMSMTFHGGYIEKKPFXNFFSSLVDVTE 462
           D     V + SG G H++ N+ +     GGY+   P  N   SL+ VT+
Sbjct: 251 DQRVGEVSSRSGRGKHTTRNVSLLPVSEGGYLADTPGFN-QPSLLKVTK 298


>At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protein
           contains Pfam PF00641: Zn-finger in Ran binding protein
           and others; contains Prosite PS00018: EF-hand
           calcium-binding domain; similar to Zinc finger protein
           265 (Zinc finger, splicing) (Fragment). (SP:Q9R020){Mus
           musculus}
          Length = 849

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 388 WTCPYCGYCDHHGLKKCGHCD 326
           W CP C + ++     C HCD
Sbjct: 408 WECPECNFLNYRRNMACFHCD 428


>At3g08020.1 68416.m00979 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 764

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
 Frame = -2

Query: 394 TSWTCPYCGYC-------DHHGLKKCGHCDHSYLCCAQ 302
           +SW+CP C  C       D +    C  CD +Y C  Q
Sbjct: 193 SSWSCPSCRVCEVCRRTGDPNKFMFCKRCDAAYHCYCQ 230


>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
           similar to SP|Q92973 Importin beta-2 subunit
           (Transportin) {Homo sapiens}; contains Pfam profile
           PF03810: Importin-beta N-terminal domain
          Length = 891

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 624 CSRWTTNCSSQFPPYGLKRNVPTMM 698
           C  W+  C +Q PP  LK  +P ++
Sbjct: 284 CEFWSAYCDAQLPPENLKEFLPRLI 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,718,343
Number of Sequences: 28952
Number of extensions: 496309
Number of successful extensions: 1287
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)