Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30188
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 29 0.76
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 28 1.7
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom... 28 1.7
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 3.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 3.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 3.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 3.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 3.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 3.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 3.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 3.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 3.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 3.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 3.0
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 26 5.3
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch... 26 7.0
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar... 26 7.0
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 26 7.0
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 29.1 bits (62), Expect = 0.76
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +1
Query: 376 VGIAGYMKHTDL---EDFPGGFFLKIGT*TLHYSISGRQERPEDH*YLQTDLQCCGIKQS 546
+G++G K L D PG FL + L Y+I GR+ P+ +L++ L+ C I ++
Sbjct: 93 LGVSGAGKTYTLFGPSDRPGVAFLALDA--LFYAIKGREASPQTVEFLRSQLEKCKIVEA 150
Query: 547 GR 552
+
Sbjct: 151 SK 152
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 553 LGPITVCPYRARGCSAQEIQ*RASSRPAPR 642
+GP+ P + GCS +Q R S +PR
Sbjct: 775 VGPVQPIPAQTTGCSVHSLQQRTFSNESPR 804
>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +1
Query: 244 RSHHVGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLE 414
+S HV + F G K HC+I+ F L + + V +A + DL+
Sbjct: 22 KSAHVACGALVAVFLGLYIGTKSIHCLILFFLAICLWLSLTWFLVELAHARVNNDLQ 78
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 346 LLIIFVAELAVGIAGYMKHTDLEDFPGGFF-LKIGT*TLHYSISGRQ 483
LL +++AVG KH D + +P G++ K+ L+YS+S ++
Sbjct: 709 LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 346 LLIIFVAELAVGIAGYMKHTDLEDFPGGFF-LKIGT*TLHYSISGRQ 483
LL +++AVG KH D + +P G++ K+ L+YS+S ++
Sbjct: 709 LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 346 LLIIFVAELAVGIAGYMKHTDLEDFPGGFF-LKIGT*TLHYSISGRQ 483
LL +++AVG KH D + +P G++ K+ L+YS+S ++
Sbjct: 709 LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 346 LLIIFVAELAVGIAGYMKHTDLEDFPGGFF-LKIGT*TLHYSISGRQ 483
LL +++AVG KH D + +P G++ K+ L+YS+S ++
Sbjct: 709 LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 346 LLIIFVAELAVGIAGYMKHTDLEDFPGGFF-LKIGT*TLHYSISGRQ 483
LL +++AVG KH D + +P G++ K+ L+YS+S ++
Sbjct: 709 LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 346 LLIIFVAELAVGIAGYMKHTDLEDFPGGFF-LKIGT*TLHYSISGRQ 483
LL +++AVG KH D + +P G++ K+ L+YS+S ++
Sbjct: 709 LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 346 LLIIFVAELAVGIAGYMKHTDLEDFPGGFF-LKIGT*TLHYSISGRQ 483
LL +++AVG KH D + +P G++ K+ L+YS+S ++
Sbjct: 709 LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 346 LLIIFVAELAVGIAGYMKHTDLEDFPGGFF-LKIGT*TLHYSISGRQ 483
LL +++AVG KH D + +P G++ K+ L+YS+S ++
Sbjct: 709 LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 346 LLIIFVAELAVGIAGYMKHTDLEDFPGGFF-LKIGT*TLHYSISGRQ 483
LL +++AVG KH D + +P G++ K+ L+YS+S ++
Sbjct: 709 LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 346 LLIIFVAELAVGIAGYMKHTDLEDFPGGFF-LKIGT*TLHYSISGRQ 483
LL +++AVG KH D + +P G++ K+ L+YS+S ++
Sbjct: 709 LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 346 LLIIFVAELAVGIAGYMKHTDLEDFPGGFF-LKIGT*TLHYSISGRQ 483
LL +++AVG KH D + +P G++ K+ L+YS+S ++
Sbjct: 709 LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKE 755
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 449 PERSITQYPVDKNVQKTIDIYKQTCNAAG 535
P +YPV K +QKT D +++ +AG
Sbjct: 33 PPSVFPEYPVHKAIQKTSDSFRKRNYSAG 61
>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -1
Query: 250 ENDRSELVEVLIGEVHVRIRVYFSPDAN 167
E+ E++E GE + +R++F+P+A+
Sbjct: 76 ESPPFEVIETGWGEFDIMVRIFFAPEAH 103
>SPAC15E1.03 |rpl36a||60S ribosomal protein
L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 593 APPRRFNDGRRRGLHRETRPTFHSKGCLTK 682
A +R D ++ G +T+P FH K +TK
Sbjct: 37 AQGKRRYDRKQSGFGGQTKPVFHKKAKVTK 66
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 487 VLVYRILSNGAFRCQFLKKTPPGNLPSPYASCNQRCP 377
+L+Y G+F Q L KT PG LP N P
Sbjct: 312 LLIYHCSGCGSFAEQPLGKTSPGRLPGTTKFSNASGP 348
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,411,457
Number of Sequences: 5004
Number of extensions: 74240
Number of successful extensions: 198
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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