Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30188
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0389 + 3437383-3437651,3438279-3438396,3438914-3439018,343... 31 1.4
02_05_1287 - 35459419-35459955,35460043-35460966,35461881-354622... 31 1.4
01_06_1071 - 34289609-34292941 30 1.8
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769... 30 2.4
06_03_1162 + 28093749-28093851,28093939-28093997,28094691-280947... 29 3.2
03_03_0257 + 15903723-15905201 29 3.2
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 28 9.7
06_01_0994 + 7719974-7721323 28 9.7
05_04_0132 + 18303925-18307164 28 9.7
05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297... 28 9.7
02_02_0661 - 12731005-12731238,12732756-12732884,12732969-127331... 28 9.7
>08_01_0389 +
3437383-3437651,3438279-3438396,3438914-3439018,
3439983-3440180,3440269-3440355
Length = 258
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCM 324
VG+I+FI + FGC GA + C+
Sbjct: 98 VGVILFITSIFGCAGASRGGCCL 120
>02_05_1287 -
35459419-35459955,35460043-35460966,35461881-35462268,
35463645-35463748,35464740-35464928,35465231-35465362
Length = 757
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 279 RVLRLLWRCQREPLHDNNVFSIPLDHIRG*TGCGHRWLHEAYGLGRFPGGV-FFKNWHLN 455
R++ +W C +EPL NV PL T RW H+ L +F + F K+ HLN
Sbjct: 519 RLVFSVWVCPQEPLSFGNV---PLLSSLSLTNVAMRW-HKVIRLSQFLANITFIKDLHLN 574
>01_06_1071 - 34289609-34292941
Length = 1110
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = -1
Query: 616 VIESPGRSSHVLGMGRP*SAPVGRTVLSRSIASLFVDINGLLDVLVYRILSNGAFRCQFL 437
V E SS G G+P P +L + +L I + D L ++ G +C L
Sbjct: 801 VTEVTQLSSEFTGFGQPKGFPALEDLLLEDMPNLSEWIFDVADQLFPQLTELGLIKCPQL 860
Query: 436 KKTPP 422
KK PP
Sbjct: 861 KKLPP 865
>06_02_0032 +
10775031-10775520,10775661-10776246,10776333-10776973,
10777270-10777973
Length = 806
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 223 LLQVRSDRSHHVGIIVFIVAFFGCCGAVKENHCMIITFSVFLLII 357
L+Q + HH+ + I+ FG GA C +T S++++ +
Sbjct: 455 LVQYKPILKHHILELAMIMDLFGLIGAYSAGSCRDVTTSIYVIAL 499
>06_03_1162 +
28093749-28093851,28093939-28093997,28094691-28094766,
28094848-28094919,28095023-28095110,28095230-28095485,
28095583-28095698,28096064-28096127,28096252-28096354,
28096446-28096554,28097048-28097234
Length = 410
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 28 FYSLVIQFGGNI*LNNNGPRRWNVLCKVPHVLLQSSVCHYGIDH 159
F+S+ Q+ G + GP W+ L K P ++ S +DH
Sbjct: 6 FWSIYYQYEGAVNEGQRGPTIWDTLTKRPGRVIDFSNADVAVDH 49
>03_03_0257 + 15903723-15905201
Length = 492
Score = 29.5 bits (63), Expect = 3.2
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Frame = -1
Query: 634 QAATTPVIESPGRSSHVLGMGR------P*SAPVGRTVLSRSIASLF-VDINGLLDVLVY 476
+AAT P +++ + G+ R P +A V ++ R A F DI GL+ LV
Sbjct: 135 EAATLPAVQNVQAALVKAGLARQVRVTVPLNADVYESLDGRPSAGDFRPDIAGLMVGLVR 194
Query: 475 RILSNGAFRC----QFLKKTPPGNLPSPYASCNQRCPQPVQPRI*SRGILKT 332
+L NG F FL N P+ YA P Q + G+L T
Sbjct: 195 FLLDNGGFLTINIYPFLSLQADPNFPADYAYFPSPGSPPSQASVQDGGVLYT 246
>07_03_1552 -
27648193-27648307,27648384-27648431,27649140-27649234,
27649311-27649376,27649721-27649810,27650210-27650437,
27650572-27650605,27651106-27651611
Length = 393
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 506 YQWSSGRSCLPDIE*WSVQVPIFKKNPPGKS 414
YQ S+G + L DI W + VP F ++ G S
Sbjct: 255 YQTSAGATMLTDITFWGLLVPFFYRDKFGLS 285
>06_01_0994 + 7719974-7721323
Length = 449
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +3
Query: 519 LAMLRDKTVRPTGADHGLPIPSTWLLRPGDS--MTGVVAACTEKLDQLSTRRDVLLNWVV 692
L M+RD PTG + WL R D+ +TG + + +TRR ++ +W V
Sbjct: 48 LEMMRDPVTAPTGITYDRESVEGWLARGHDTCPVTGRPVRLADLVPNHATRR-MIQDWCV 106
>05_04_0132 + 18303925-18307164
Length = 1079
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 441 NWHLNAPLLNIR*TRTSRRPLISTNRLAMLRDKTVRPTGADHGLP 575
N H ++P + +R SRR LI T + LR + GA H P
Sbjct: 154 NGHAHSPAVPLRSFLASRRRLIKTQQSMKLRGVSAFRKGAAHQRP 198
>05_01_0378 +
2970528-2971008,2971961-2972036,2972108-2972253,
2972300-2972817
Length = 406
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +3
Query: 702 GHW-YGCSPGVWXSGNRFWF 758
G W +G PG W SG + WF
Sbjct: 345 GRWGHGPVPGAWCSGRKSWF 364
>02_02_0661 -
12731005-12731238,12732756-12732884,12732969-12733193,
12733302-12733478,12733576-12733788
Length = 325
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 493 LDVLVYRILSNGAFRCQFLKKTPP 422
++ LVY ++NG ++C F KK P
Sbjct: 179 INELVYDAINNGVYKCGFAKKQGP 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,272,779
Number of Sequences: 37544
Number of extensions: 536460
Number of successful extensions: 1297
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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