Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30188
(787 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 64 2e-10
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 7e-10
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 1e-09
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43) 58 8e-09
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0) 52 4e-07
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) 50 3e-06
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0) 45 6e-05
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38) 45 8e-05
SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0) 42 6e-04
SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06) 40 0.002
SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09) 39 0.004
SB_23555| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_47462| Best HMM Match : Ras (HMM E-Value=0) 38 0.007
SB_36515| Best HMM Match : UPF0126 (HMM E-Value=0.73) 31 1.1
SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08) 31 1.1
SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_19425| Best HMM Match : Calx-beta (HMM E-Value=0.055) 29 4.3
SB_31717| Best HMM Match : I-set (HMM E-Value=2.9e-10) 29 5.6
SB_2429| Best HMM Match : 7tm_1 (HMM E-Value=5.1e-08) 29 5.6
SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_38920| Best HMM Match : Tetraspannin (HMM E-Value=3.5e-07) 28 7.5
SB_27653| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 7.5
SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072) 28 7.5
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 63.7 bits (148), Expect = 2e-10
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLE 414
VG I+ I+AFFGCCGA KEN CM+I F + LLI+ E+A + GY+ ++
Sbjct: 413 VGCIITIIAFFGCCGAWKENKCMLILFFILLLIVLGLEIAAAVLGYINKDKIQ 465
>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 61.7 bits (143), Expect = 7e-10
Identities = 34/93 (36%), Positives = 49/93 (52%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDFPGGFF 435
VG I+ +VAF GCCGA KEN CM+I F FLL++ + E+ G Y +E+
Sbjct: 60 VGFIIALVAFLGCCGAWKENKCMLICFFAFLLLLLILEIVGGALAYNNKDKIENRLDKDI 119
Query: 436 LKIGT*TLHYSISGRQERPEDH*YLQTDLQCCG 534
LK + G+ E+ + +QT +CCG
Sbjct: 120 LK-----AIENYPGKNEKSIND--MQTKFKCCG 145
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/59 (38%), Positives = 31/59 (52%)
Frame = +2
Query: 77 MALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLI 253
MAL+G + VK L+ FN +F + GLI+ VGI A Y+ N Y P V+I
Sbjct: 1 MALQGSSNIVKILVIIFNFIFFLFGLILFGVGIWASTKLGAYVEIASVN-YATGPRVVI 58
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 60.9 bits (141), Expect = 1e-09
Identities = 30/94 (31%), Positives = 49/94 (52%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDFPGGFF 435
VG + +V+FFGCCGA+KE+ C++ TF L II E+ GY+ +E+ G
Sbjct: 332 VGAFIALVSFFGCCGAIKEHRCLLATFFALLFIILAVEITGTALGYVYRNKVEEQLG--- 388
Query: 436 LKIGT*TLHYSISGRQERPEDH*YLQTDLQCCGI 537
+ + Y G++ + + +Q +CCGI
Sbjct: 389 KDMNDTIVSYGEKGKEGITDAYDAIQKKEKCCGI 422
>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
Length = 211
Score = 58.0 bits (134), Expect = 8e-09
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY 393
VG+I+ IV+FFGC GA KEN CM+ TF V LLI+ E+A + Y
Sbjct: 62 VGVIIAIVSFFGCLGAWKENRCMLGTFFVLLLILLTLEIAAAVLAY 107
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 89 GGMSCVKYLMFCFNLLFAITGLIILIVGIRAEI 187
G +K L+ FN+LF I G+ ++ VG AE+
Sbjct: 7 GAGRILKILVVFFNVLFFIFGIALIAVGAWAEV 39
>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/95 (34%), Positives = 51/95 (53%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDFPGGFF 435
VG I+FI+ F GC GA++EN C++ FSV L IIF +LA+G+ ++ +E
Sbjct: 53 VGGIMFILGFSGCIGALRENICLLKFFSVVLAIIFFLQLALGVFVFVFQDKVE---AVIV 109
Query: 436 LKIGT*TLHYSISGRQERPEDH*YLQTDLQCCGIK 540
K+ T Y + + D +Q + +CCG K
Sbjct: 110 EKLQTAVTKYRDNADLQNLIDG--VQQEFKCCGAK 142
>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 252
Score = 52.4 bits (120), Expect = 4e-07
Identities = 30/96 (31%), Positives = 45/96 (46%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDFPGGFF 435
+GI+ IVAF CCGA+KE+ CM+ T+ + IF E+ + Y+ +E G
Sbjct: 65 IGIVTVIVAFLACCGALKESQCMLGTYFGLVTAIFCLEVTAIVLAYVYRERIEKNLHG-- 122
Query: 436 LKIGT*TLHYSISGRQERPEDH*YLQTDLQCCGIKQ 543
I + Y +SG + D +CCG Q
Sbjct: 123 -DIRSTMNEYHLSGHDAVTRAIDEIHRDFKCCGNAQ 157
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Frame = +2
Query: 77 MALEGGMSCVKYLMFCFNLLFAITGLIILIVGI-----RAEINSYPYMNFTDENFYKFAP 241
M+ + G C+K+++F FNLLF + G I +G+ + E+ + Y T YK AP
Sbjct: 1 MSTDWGFKCIKFMVFFFNLLFLLAGCAIFAIGVWIISSKDEV-AGDYSRLTGTINYKTAP 59
Query: 242 IVLIM 256
I+ I+
Sbjct: 60 ILCIV 64
>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
Length = 286
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/94 (28%), Positives = 51/94 (54%)
Frame = +1
Query: 259 GIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDFPGGFFL 438
G ++++ FFGC GA+KEN + ++ +F+ + +A G+ +++ L D P L
Sbjct: 80 GFSLYLIVFFGCVGALKENTLFLASYGIFIFCCLIPIIAAGVLAFLQREKLVD-PKA-RL 137
Query: 439 KIGT*TLHYSISGRQERPEDH*YLQTDLQCCGIK 540
+ G + S +QE + ++QT +CCGI+
Sbjct: 138 EDGL-KSYQQDSSKQEFID---FIQTRFKCCGIE 167
>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 280
Score = 45.2 bits (102), Expect = 6e-05
Identities = 23/95 (24%), Positives = 46/95 (48%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDFPGGFF 435
+GI++F + FFGC GA++EN C + + + + + +A G Y + ++
Sbjct: 84 IGILMFFIGFFGCVGALRENTCFLTVYGTSVFLCLILLIACGAVAYTQKDKVQALKE--- 140
Query: 436 LKIGT*TLHYSISGRQERPEDH*YLQTDLQCCGIK 540
++ Y + D ++QT L+CCG++
Sbjct: 141 -RLKQDLKKYLDDPLNQDLID--FMQTLLKCCGVE 172
Score = 32.7 bits (71), Expect = 0.35
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 101 CVKYLMFCFNLLFAITGLIILIVGI 175
C KY +F N++F I GL+++ VG+
Sbjct: 27 CTKYTLFFINVIFFILGLLVMTVGV 51
>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
Length = 919
Score = 44.8 bits (101), Expect = 8e-05
Identities = 15/51 (29%), Positives = 32/51 (62%)
Frame = +1
Query: 259 GIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDL 411
G +V IV GC +KEN +++++ + L++IF+ E+A G+ + +++
Sbjct: 67 GCLVIIVCVVGCVAVIKENRFILVSYLIMLVLIFILEIATGVVAVIYRSEI 117
>SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 44.4 bits (100), Expect = 1e-04
Identities = 26/94 (27%), Positives = 48/94 (51%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDFPGGFF 435
VGI++F++A GC GA++EN ++ + + + + ++ GIA YM + +
Sbjct: 88 VGILLFLIATVGCIGALRENTILLAIYGGAVTLCLIFLVSAGIAVYMHQDKVVE------ 141
Query: 436 LKIGT*TLHYSISGRQERPEDH*YLQTDLQCCGI 537
K+ HY ++ LQT+L+CCG+
Sbjct: 142 -KLKDDLKHYRDPDKENFQFLIDRLQTNLKCCGV 174
Score = 33.5 bits (73), Expect = 0.20
Identities = 10/25 (40%), Positives = 21/25 (84%)
Frame = +2
Query: 98 SCVKYLMFCFNLLFAITGLIILIVG 172
+C+KY++F N++F + G++IL++G
Sbjct: 37 TCIKYILFFVNVVFWVFGVLILVIG 61
>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 42.3 bits (95), Expect = 4e-04
Identities = 26/95 (27%), Positives = 45/95 (47%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDFPGGFF 435
+G ++F++ FGC GA++EN C++ + II + G G+ + D+ +
Sbjct: 110 LGGLLFVITIFGCIGALRENRCLLTAYIWMCGIILAGMIVCGGLGFY-YKDVLETKVTAQ 168
Query: 436 LKIGT*TLHYSISGRQERPEDH*YLQTDLQCCGIK 540
LK G D +QT+LQCCG++
Sbjct: 169 LKDAIVLYRDPTKGDLHLIID--TVQTELQCCGVQ 201
Score = 33.5 bits (73), Expect = 0.20
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 101 CVKYLMFCFNLLFAITGLIILIVGI 175
CVKY +F N++F + G +IL VGI
Sbjct: 59 CVKYSLFTINVIFWLAGAVILAVGI 83
>SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 299
Score = 41.9 bits (94), Expect = 6e-04
Identities = 27/94 (28%), Positives = 47/94 (50%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDFPGGFF 435
VGI++F++A GC GA++EN ++ + + + + ++ G A Y+ H D
Sbjct: 88 VGILLFLIATVGCIGALRENTILLAIYGGAVTLCLILLVSAGTAVYI-HRD------KVV 140
Query: 436 LKIGT*TLHYSISGRQERPEDH*YLQTDLQCCGI 537
K+ HY ++ LQT+L+CCGI
Sbjct: 141 AKLKDDLQHYRDPDKENFQFLIDRLQTNLKCCGI 174
Score = 33.5 bits (73), Expect = 0.20
Identities = 10/25 (40%), Positives = 21/25 (84%)
Frame = +2
Query: 98 SCVKYLMFCFNLLFAITGLIILIVG 172
+C+KY++F N++F + G++IL++G
Sbjct: 37 TCIKYILFFVNVVFWVFGVLILVIG 61
>SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = +1
Query: 259 GIIVFIVAFFGCCGAVKENHCMIIT 333
G V V FFGCCGAVKE+ CM+ T
Sbjct: 321 GAFVTFVGFFGCCGAVKESRCMLAT 345
>SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06)
Length = 187
Score = 40.3 bits (90), Expect = 0.002
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSV 342
+G ++ I+ F GCCGA+KE+ C++ T S+
Sbjct: 81 IGFLIAIIGFIGCCGALKEHTCLLKTVSI 109
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 128 NLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVL 250
+L+F + GL +L VGI A I YM + ++ A I++
Sbjct: 39 HLVFQLMGLSVLAVGIWARIQFSDYMKLSSHDYATAAYILI 79
>SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)
Length = 669
Score = 39.1 bits (87), Expect = 0.004
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 259 GIIVFIVAFFGCCGAVKENHCMIITFS 339
G +V + F GCCGAVKEN C ++ S
Sbjct: 206 GALVMFIGFVGCCGAVKENKCFLLLVS 232
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 92 GMSCVKYLMFCFNLLFAITGLI 157
GM C+KYL+F FN +F + +I
Sbjct: 76 GMQCMKYLLFAFNFVFWCSKII 97
>SB_23555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 39.1 bits (87), Expect = 0.004
Identities = 11/23 (47%), Positives = 20/23 (86%)
Frame = +1
Query: 259 GIIVFIVAFFGCCGAVKENHCMI 327
G ++ +++FFGCCGA+KE+ C++
Sbjct: 33 GALIALISFFGCCGAIKESRCLL 55
>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
Length = 385
Score = 38.3 bits (85), Expect = 0.007
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFL 348
+G ++ I+ F GCCGA+KE+ C++ T L
Sbjct: 223 IGFLIAIIGFIGCCGALKEHTCLLKTIKTGL 253
>SB_36515| Best HMM Match : UPF0126 (HMM E-Value=0.73)
Length = 150
Score = 31.1 bits (67), Expect = 1.1
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = +1
Query: 259 GIIVFIVAFFGCCGAVKEN 315
G+++F+++F GC GA++EN
Sbjct: 26 GVLMFVISFSGCLGALREN 44
>SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08)
Length = 542
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +1
Query: 256 VGIIVFIVAFFGCC--GAVKENHCMIITFSVFLLIIFVAELAVG 381
VG+I+ I+A GA K+N+ ++ +V +IFV E+++G
Sbjct: 66 VGLILLILAISAVTILGAFKQNNRVLTILAVLFFVIFVTEISLG 109
>SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 289 GCCGAVKENHCMIITFSVFLLIIFVAELAVGI 384
G C + N C++ T+ F+LI+ VAE+ + +
Sbjct: 36 GVCALLYMNPCLLKTYFSFMLILVVAEVTIAV 67
>SB_19425| Best HMM Match : Calx-beta (HMM E-Value=0.055)
Length = 157
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -1
Query: 550 GRTVLSRSIASLFVDINGLLDVLVYRILSNGAFRCQFLKKTPPGN 416
G T S+ +LFV ++D+LV R+ ++ RC LK P G+
Sbjct: 43 GGTFNFESVDTLFVKEGDVIDLLVIRLGASLDERCVTLKTNPSGD 87
>SB_31717| Best HMM Match : I-set (HMM E-Value=2.9e-10)
Length = 84
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 461 ITQYPVDKNVQKTIDIYKQTCNAAG*NSP-ADWGR 562
I+ YPV + V +TID K CN+ G +P W R
Sbjct: 6 ISSYPV-QTVNETIDFLKLACNSDGYPTPTVTWSR 39
>SB_2429| Best HMM Match : 7tm_1 (HMM E-Value=5.1e-08)
Length = 377
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 343 FLLIIFVAELAVGIAGYMKHTDLEDF 420
F+L + VA+L VGI+G + H D+ +F
Sbjct: 51 FVLSMTVADLQVGISGILYHLDIVNF 76
>SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 678
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 139 CHYGIDHPDSWHQG*NKLVSLHELHR*ELLQVRSDRSHH 255
C+Y + PD+W + + SL R E++ R S+H
Sbjct: 120 CYYSLQPPDNWDKKKTSIQSLCSRERKEVITSRYQTSNH 158
>SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 733
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 189 FISALMPTIRMINPVMANRRLKQNMRYF 106
FI+ALM I +I +M + L++ M YF
Sbjct: 39 FITALMGNIILITVIMKTKSLRRTMNYF 66
>SB_38920| Best HMM Match : Tetraspannin (HMM E-Value=3.5e-07)
Length = 219
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSV 342
+G +V ++ GC G VKE+ ++I+F +
Sbjct: 34 IGGVVVLICTCGCYGTVKEHRYLLISFLI 62
>SB_27653| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 416
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 265 IVFIVAFFG---CCGAVKENHCMIITFSVFLLIIFVAELAVGI 384
+VFIVAFFG V N + T +VF+L + +++L + I
Sbjct: 32 VVFIVAFFGNILAISVVLSNVHLKTTTNVFILNLAISDLLIAI 74
>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
Length = 2374
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 427 PPGNL-PSPYASCNQRCPQPVQPRI*SRGILKTLLS 323
PP N P P+ N+ QPVQ R+ +TLLS
Sbjct: 1363 PPSNCSPLPWKQINEEVEQPVQERVKDSRKQETLLS 1398
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,323,238
Number of Sequences: 59808
Number of extensions: 584380
Number of successful extensions: 1414
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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