Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30188
(787 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 61 1e-09
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 46 4e-05
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 44 1e-04
AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical ... 42 7e-04
U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin fam... 40 0.003
U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin fam... 38 0.008
Z92824-4|CAB07307.2| 395|Caenorhabditis elegans B0413.2 protein. 38 0.011
AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical ... 35 0.076
AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin f... 34 0.10
AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin f... 34 0.10
Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical pr... 33 0.23
U64608-5|AAB04596.1| 393|Caenorhabditis elegans Hypothetical pr... 28 6.6
AL021487-1|CAA16352.4| 241|Caenorhabditis elegans Hypothetical ... 28 6.6
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 60.9 bits (141), Expect = 1e-09
Identities = 35/119 (29%), Positives = 57/119 (47%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDFPGGFF 435
+G + ++ F GCCGA++EN+C+ ++F+V L ++ E+A I GY H + F G
Sbjct: 59 IGSLCTLLGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALH---DSFRLGIG 115
Query: 436 LKIGT*TLHYSISGRQERPEDH*YLQTDLQCCGIKQSGRLGPITVCPYRARGCSAQEIQ 612
++ T + Y S E D +CCG+ S T P C +EI+
Sbjct: 116 NQLQTGMVRYHESRGVESAWDK--THQLFECCGVTNSSDWLTFTTIP---DSCCIEEIE 169
Score = 35.9 bits (79), Expect = 0.033
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +2
Query: 83 LEGGMSCVKYLMFCFNLLFAITGLIILIVG 172
+EGG++ VKYL+F NL+ + GL ++IVG
Sbjct: 2 VEGGVTIVKYLLFLANLVLWVGGLSLIIVG 31
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/94 (26%), Positives = 41/94 (43%)
Frame = +1
Query: 259 GIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDFPGGFFL 438
G I+ +V +FGC GA K N C + F L++ F ELA + + K ++ +
Sbjct: 64 GAIIILVGYFGCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMY 123
Query: 439 KIGT*TLHYSISGRQERPEDH*YLQTDLQCCGIK 540
T+ S + +Q +CCG+K
Sbjct: 124 D----TIRNRYSSETAFKDAFDTVQEKFECCGVK 153
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 45.6 bits (103), Expect = 4e-05
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDF 420
VG + FI+ F GC G+++EN + +S L ++ +AE + G+ Y L+++
Sbjct: 91 VGFLTFIIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNY 145
Score = 36.7 bits (81), Expect = 0.019
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 101 CVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 208
CVKY +F FN++F + G +L+ G+ A+I ++N
Sbjct: 37 CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVN 72
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 GIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYM-KHTDLEDF 420
G IV +VAF GCCGA KE ++ +S L++I ++A I ++ H DF
Sbjct: 90 GFIVIVVAFLGCCGAAKEWRPLLCCYSSCLMLILAIQIAATIYAFLHSHMFENDF 144
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 74 TMALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 208
TM L +K+ +F FNL+F + GLI L +G+ ++ Y N
Sbjct: 8 TMPLSCTARALKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDN 52
>AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical
protein Y39B6A.6 protein.
Length = 321
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLE-DFPGGF 432
+G ++ +VA GCCG + +I +S+ + ++ VA L+ GI K L+ +
Sbjct: 120 LGAVMMVVAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGLDVELSDAL 179
Query: 433 FLKIGT*TLHYSISGRQERPEDH*YLQTDLQCCG 534
+ +Y G + DH LQT +CCG
Sbjct: 180 NYMV---QHYYQGPGVVQESLDH--LQTAFRCCG 208
>U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin family
protein 9 protein.
Length = 233
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/93 (29%), Positives = 44/93 (47%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDFPGGFF 435
VG ++F+V FFGCCGA E+ ++ F ++I+ EL A T+ E+F
Sbjct: 74 VGALLFLVGFFGCCGAGCESPVLLGLFIFIIVILTAVELG---ATVFAMTNREEFVSSIQ 130
Query: 436 LKIGT*TLHYSISGRQERPEDH*YLQTDLQCCG 534
+ + Y + + +P +Q QCCG
Sbjct: 131 QVLKKSSATYELR-KNIKP-----IQNVFQCCG 157
>U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin family
protein 17 protein.
Length = 243
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 259 GIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVG 381
G +V F G CGAV + +++ F +FL+ F+A++A+G
Sbjct: 34 GCAQLLVGFLGLCGAVNRSRFLLLAFVMFLIGTFLADVAMG 74
>Z92824-4|CAB07307.2| 395|Caenorhabditis elegans B0413.2 protein.
Length = 395
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGI 384
+G ++ +VA GCCG + +I +S+ + ++ VA L+ GI
Sbjct: 231 LGAVMMVVAMXGCCGITGRSRPFLIIYSMVVFLLLVATLSCGI 273
>AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical
protein Y39E4B.4 protein.
Length = 223
Score = 34.7 bits (76), Expect = 0.076
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +1
Query: 274 IVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMK 399
I+ F G GAV + ++ + +F++I+F+ E+A+GI +K
Sbjct: 83 IIGFVGVIGAVIRSKYLLAPYFLFMVILFLLEIAIGITVLVK 124
>AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin
family protein 14,isoform a protein.
Length = 427
Score = 34.3 bits (75), Expect = 0.10
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +1
Query: 259 GIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY-MKHTDL-EDFPGGF 432
G + +V+FFG GA+++N ++ F+ + + ++ +AV + + + +TD E +
Sbjct: 80 GFSICVVSFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANW 139
Query: 433 FLKIGT*TLHYSISGRQERPEDH*YLQTDLQCCGI 537
L H + + E LQ +L+CCG+
Sbjct: 140 LLLYAVKNYHTN----RNLAEIMDALQENLECCGV 170
>AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin
family protein 14,isoform b protein.
Length = 451
Score = 34.3 bits (75), Expect = 0.10
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +1
Query: 259 GIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY-MKHTDL-EDFPGGF 432
G + +V+FFG GA+++N ++ F+ + + ++ +AV + + + +TD E +
Sbjct: 104 GFSICVVSFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANW 163
Query: 433 FLKIGT*TLHYSISGRQERPEDH*YLQTDLQCCGI 537
L H + + E LQ +L+CCG+
Sbjct: 164 LLLYAVKNYHTN----RNLAEIMDALQENLECCGV 194
>Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical
protein C17G1.8 protein.
Length = 291
Score = 33.1 bits (72), Expect = 0.23
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +1
Query: 259 GIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYM-KHTDLEDFPGGFF 435
G+ +FI+ G G N ++ ++ F++++ + I G + K E+
Sbjct: 56 GVTIFIIVAVGYLGVSWSNKSLLYSYIGFVILLILVHGIARITGSLHKEEAKENLRKSML 115
Query: 436 LKIGT*TLHYSISGRQERPEDH*YLQTDLQCCGI 537
I T + I + +LQ +LQCCG+
Sbjct: 116 HNINTTAVVTKIGREIKLSLTWDHLQRELQCCGV 149
>U64608-5|AAB04596.1| 393|Caenorhabditis elegans Hypothetical
protein T22B7.7 protein.
Length = 393
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -1
Query: 97 HSTFEGHCYSIKYYRQIVLLGNKTIHTSTNKA 2
H T H Y + YR I+L G K TS NKA
Sbjct: 143 HQTSLSHGYGLSPYRDIILRG-KVTWTSENKA 173
>AL021487-1|CAA16352.4| 241|Caenorhabditis elegans Hypothetical
protein Y45F10B.1 protein.
Length = 241
Score = 28.3 bits (60), Expect = 6.6
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Frame = +1
Query: 190 LVSLHELHR*ELLQVRSDRSHHVGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAE 369
LV+L + E V S +G + ++ F GC + + V + I+FV +
Sbjct: 49 LVNLLSVDNIECFYVYRTISIMIGGCMVVLGFCGCFAVGFGSKTALSVHLVLVFIVFVVK 108
Query: 370 LAVGIAGYMKHTD--LEDFPGGFFLKIGT*TLHYSISGRQERPEDH*YLQTDLQCCG 534
+ V I ++ + D +F G + ++ +Y + R + D ++ T L+CCG
Sbjct: 109 I-VAIVMFLANNDHLRREFVGVYRDEL---VANYHNNSRTKNTLD--WVHTSLKCCG 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,298,135
Number of Sequences: 27780
Number of extensions: 438166
Number of successful extensions: 1227
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -