Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30188
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32400.2 68414.m03998 senescence-associated family protein co...    34   0.12 
At1g32400.1 68414.m03997 senescence-associated family protein co...    34   0.12 
At1g66770.1 68414.m07590 nodulin MtN3 family protein contains Pf...    32   0.50 
At2g20230.1 68415.m02364 expressed protein                             30   1.5  
At4g28770.1 68417.m04114 expressed protein                             29   3.5  
At5g43100.1 68418.m05261 aspartyl protease family protein low si...    28   6.1  
At1g64840.1 68414.m07351 F-box family protein contains Pfam:PF00...    28   6.1  
At5g42950.1 68418.m05236 GYF domain-containing protein contains ...    28   8.1  

>At1g32400.2 68414.m03998 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = +1

Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYM 396
           +G+ +F+++  GC G    + C +  +S+ L+++ + EL  G A ++
Sbjct: 88  IGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVEL--GFAAFI 132


>At1g32400.1 68414.m03997 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = +1

Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYM 396
           +G+ +F+++  GC G    + C +  +S+ L+++ + EL  G A ++
Sbjct: 88  IGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVEL--GFAAFI 132


>At1g66770.1 68414.m07590 nodulin MtN3 family protein contains Pfam
           PF03083 MtN3/saliva family; similar to LIM7 (cDNAs
           induced in meiotic prophase in lily microsporocytes)
           GI:431154 from [Lilium longiflorum]
          Length = 261

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 17/47 (36%), Positives = 30/47 (63%)
 Frame = +1

Query: 265 IVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHT 405
           IVF+  FF  CG  ++ H ++I+  + + ++FVA LAV +   ++HT
Sbjct: 86  IVFLTIFFVFCG--RQQHRLVISAVLTVQVVFVATLAV-LVLTLEHT 129


>At2g20230.1 68415.m02364 expressed protein
          Length = 270

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVF--LLIIFVAELAVGIA 387
           VGI+V IV F G   A   N C +  +S+   LLI+  A L   IA
Sbjct: 107 VGILVCIVTFIGFIAAEAINGCCLCFYSILKTLLILLEAALVAYIA 152


>At4g28770.1 68417.m04114 expressed protein
          Length = 281

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 256 VGIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELA-VGIAGYMKHTDLEDFP 423
           +GI+V IV   G   A   N C +  +S+   ++ + E A VG     +H + +D P
Sbjct: 118 IGILVCIVTIIGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVIDRHWE-KDLP 173


>At5g43100.1 68418.m05261 aspartyl protease family protein low
           similarity to CND41, chloroplast nucleoid DNA binding
           protein [Nicotiana tabacum] GI:2541876; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 631

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 596 PPR-RFNDGRRRGLHRETRPTFHSKGCLTKLGCSHERTLVWV 718
           PPR R  D RRR LH+   P  H K     L   +  T +W+
Sbjct: 41  PPRPRVEDFRRRRLHQSQLPNAHMKLYDDLLSNGYYTTRLWI 82


>At1g64840.1 68414.m07351 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 384

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -3

Query: 605 SWAEQPRARYGQTVIGPSRPDCFIPQHCKSVCRYQWSSGRSCLPDIE*WSVQVPIFKKNP 426
           +W++ P       +I  +  +CF   H +S+CR  W S       +   S  +P F K P
Sbjct: 4   NWSQLPEELLN--LISKNLDNCFDVVHARSICR-SWRSAFPFPSSLSTLSYSLPTFAKFP 60

Query: 425 PGKSSKSVC 399
               SK +C
Sbjct: 61  --LVSKDLC 67


>At5g42950.1 68418.m05236 GYF domain-containing protein contains
           Pfam profile: PF02213 GYF domain
          Length = 1714

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +3

Query: 555 GADHGLPIPSTWLL-RPGDSMTGV 623
           G+D+ +P+   WLL +PG++ TG+
Sbjct: 31  GSDNAIPLSPQWLLSKPGENKTGM 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,199,480
Number of Sequences: 28952
Number of extensions: 411386
Number of successful extensions: 948
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)