Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30185
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc...    29   0.99 
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    28   1.3  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    28   1.3  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   2.3  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   3.0  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    27   4.0  
SPAC3A12.19 |||mitochondrial ribosomal protein subunit L27|Schiz...    26   5.3  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   7.0  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    26   7.0  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    26   7.0  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    26   7.0  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   9.3  

>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
           Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 709 GAPGTPKKRGKNHGSLSSPPHLP*NGLQNGMITKS 605
           G P TP + G+ HG+L  PP  P       MIT S
Sbjct: 43  GPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITPS 77


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 16/67 (23%)
 Frame = +2

Query: 251 FFGKHLGELLSSKGYDIMNVARM---------PASKNISWSTIEA-----SGLP--KNTS 382
           F G ++ +L  +KGY++++V+R          P   ++ W T++A     S LP  ++ S
Sbjct: 11  FLGHNICKLAIAKGYEVVSVSRRGAGGLHNKEPWMDDVEWETLDAQKDPNSLLPVLRDAS 70

Query: 383 AVVNCAG 403
           AVVN  G
Sbjct: 71  AVVNSVG 77


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 623 RNDHKVPTGGNLPGSQ--LFPPFKQLRPVEEENLPPVV 516
           RN  K P  G  P  Q  L PP   +RP E+  LPP++
Sbjct: 27  RNSSKSPKVGQKPILQGALGPPLDFIRPKEKVTLPPLL 64


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 343  VNNRGLRLTKKYFGRCQLCWTTIPF 417
            V +R LRL KKY     +CW  I +
Sbjct: 1229 VFSRNLRLLKKYLNDVSICWEQIVY 1253


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 671 WFFIIPPPSTLERAPERND 615
           W  ++PPPSTLE +  R +
Sbjct: 113 WHLLLPPPSTLELSENRQN 131


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = -3

Query: 676 NHGSLSSPPHLP*NGLQNGMITKSPLGGTYLGASFFPHSNNLGPWRKKICPQL*DCLIHI 497
           NH   S  P+    G++  +  K+P G  Y+GA +   +         +     DCL  I
Sbjct: 406 NHTDDSYYPYYA--GVEKDIFLKNPNGSIYIGAVWPGFTAFPDFTNPDVVDYWKDCL--I 461

Query: 496 NLHWKVHSTNSVPVSGL 446
           NL +   S  +VP SG+
Sbjct: 462 NLTYAFGSNGTVPFSGI 478


>SPAC3A12.19 |||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 543 HGPKLFEWGKKLAPR*VPPSGDFVIIPFWS 632
           HG  L +W +      VPPSGD  ++PF S
Sbjct: 38  HGGFLVQWSR--VRTFVPPSGDCELLPFVS 65


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 320 PASKNISWSTIEASGLPKNTSAVVNCAGQQFHLGGEKP 433
           PA+  +  +T  + G   N S +V C GQQ   G   P
Sbjct: 767 PANSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVP 804


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 23/104 (22%), Positives = 37/104 (35%)
 Frame = -1

Query: 723 SQSPRGPPEPQKKGVKTMVLYHPPPIYPRTGSRTE*SQSPHWGEPTWEPAFSPIQTT*AR 544
           S SP  P      G  T   Y P   Y    +  +   +P   +    P      +  + 
Sbjct: 249 SNSPLNPSH-DSAGASTFNTYFPNSTYQNILNSLD--NNPAVLDLNGPPNQESSSSASSY 305

Query: 543 GGRKSAPSCRTASSILIYIGRFIAPTLYLCPDW*KKRGFSPPKW 412
           G R   P+ R+ S  +++       T Y+   + K+R F  P W
Sbjct: 306 GSRTQTPNARSCSLNIVFHKHKKVCTYYMIRHYAKRRLFITPTW 349


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 390 SIVLDNNSIWGGKNPF 437
           S+VL   S+ GGKNPF
Sbjct: 328 SLVLTTRSVLGGKNPF 343


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 690 KKGVKTMVLY-HPPPIYPRTGS 628
           K  V   +LY HPPP YP +GS
Sbjct: 453 KDYVNGKLLYVHPPPNYPNSGS 474


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 471 PTLYLCPDW*KKRGFSPPKW 412
           PT YLCP   +  GF  PK+
Sbjct: 52  PTCYLCPGNIRATGFENPKY 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,743,796
Number of Sequences: 5004
Number of extensions: 91860
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)