Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30185
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0132 - 1197988-1198206,1198255-1198356,1198518-1198821,119... 31 1.4
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661... 30 1.8
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410... 30 2.4
07_01_1212 + 11560247-11560684,11560773-11560826,11560926-115609... 29 3.2
08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999 29 5.5
03_05_0680 + 26682010-26682030,26682675-26682869,26684203-266844... 28 7.3
11_01_0703 - 5785599-5785607,5785954-5786008,5786572-5786627,578... 28 9.6
10_08_0847 + 21006842-21007042,21007173-21007261,21012226-210124... 28 9.6
07_03_1501 - 27005542-27005976,27006657-27008660 28 9.6
04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420 28 9.6
>01_01_0132 -
1197988-1198206,1198255-1198356,1198518-1198821,
1199221-1199292,1199384-1199420,1199527-1199585,
1199844-1200128,1200293-1200465,1201020-1201213,
1202245-1202374
Length = 524
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 613 TKSPLGGTYLGASFFPHSNNLGPWRK 536
T + LGG G P NNLGPW K
Sbjct: 28 TLADLGGAAKGIDSVPEVNNLGPWAK 53
>03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,
6617328-6617469,6617567-6617938,6618056-6618187,
6618907-6619035,6619125-6621188
Length = 1176
Score = 30.3 bits (65), Expect = 1.8
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -1
Query: 705 PPEPQKKGVKTMVLYHPPPIYPRTGSRTE*SQSPHWGEPTWE--PAF-SPIQTT*ARGGR 535
PPEP +K + + H P Y +++ PH G+PT E P+ P+ A G
Sbjct: 1043 PPEPIRKTTPSFRVMHTSPPYRNGLHQSQTVGHPH-GDPTLERHPSQPKPLDLKDAPGEN 1101
Query: 534 KSAPSCRTASSILIYIGRFIAP 469
KS+P AS L IAP
Sbjct: 1102 KSSPE-GNASFSLFQFNLPIAP 1122
>01_01_0558 +
4098383-4098510,4100462-4100572,4100765-4100853,
4100974-4101107,4101337-4101435,4102619-4102994,
4103883-4104337,4104419-4107409
Length = 1460
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -2
Query: 587 PGSQLFPPFKQLRP 546
PGS LFPPFK+ RP
Sbjct: 312 PGSSLFPPFKKARP 325
>07_01_1212 +
11560247-11560684,11560773-11560826,11560926-11560985,
11561084-11561227
Length = 231
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -1
Query: 666 LYHPPPIYPRTGSRTE*SQSPHWGEPTWEPAFSPIQTT*ARGGRKSAPSCRTASS 502
L+ P P G+ S +P +G P+ PAF +T A G S PS T S+
Sbjct: 10 LFGTPSTTPAFGAP---SSTPAFGTPSTNPAFGTPSSTPAFGAPSSTPSFGTPST 61
>08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999
Length = 698
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +1
Query: 307 RSSYASLEKYILVNNRGLRLTKKYFGRCQLCWTTIPFGGGKTPFF--LPVRTQVQSWCYE 480
R+ Y+S + N+G R K + LC T + F G P L + V SW
Sbjct: 490 RTLYSSNGRITFRGNKGFRCLKYFSLDIDLCGTELEFEAGAMPKIEHLKINFPVHSWTAS 549
Query: 481 PSNVN*YG 504
+ + +G
Sbjct: 550 VNGASDFG 557
>03_05_0680 +
26682010-26682030,26682675-26682869,26684203-26684428,
26684602-26685221
Length = 353
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = +1
Query: 550 LSCLNGGKSWLPGRFPPVGTL*SFRSGARSRVDGGGMIKNHGFYPFFLGFRGPPR*LGNN 729
+SC+ GG LPG P+ GA VD HGF P + + P +G+
Sbjct: 30 MSCVGGGSPPLPGHISPM------FDGALIGVDVNNDNTTHGF-P-MVEVQQPESPMGSP 81
Query: 730 TWPRGPHRRPSRGLI 774
P G ++P G +
Sbjct: 82 RTPNGSQKKPVLGKV 96
>11_01_0703 -
5785599-5785607,5785954-5786008,5786572-5786627,
5786750-5786923,5787509-5787694,5787892-5788048,
5788144-5788372,5788909-5789167,5789453-5789554
Length = 408
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 354 RPPAYQKILRPLSIVLDNNSI 416
+PP Y L+P +I+LDNN +
Sbjct: 150 KPPIYHLDLKPANILLDNNMV 170
>10_08_0847 +
21006842-21007042,21007173-21007261,21012226-21012429,
21016334-21016568,21016760-21016952,21017472-21017503,
21019172-21019236,21020766-21020985,21021172-21021370,
21021728-21021768,21023366-21023404,21023699-21023734,
21023767-21023798,21024264-21024426,21024602-21024653,
21024699-21024794,21024911-21025023,21026536-21026615,
21027343-21027577,21027765-21027890,21027994-21028092
Length = 849
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = -2
Query: 671 WFFIIPPPSTLERAPERNDHK---VPT--GGNLPGSQLFPPFKQLRPVEEEN 531
W + +P P LER E+N+ K +P G PG QL + RP +N
Sbjct: 137 WAYKMPMPEHLERLREQNECKMLEIPLHFGEEDPGLQLLDNYDPTRPSRFKN 188
>07_03_1501 - 27005542-27005976,27006657-27008660
Length = 812
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -1
Query: 681 VKTMVLYHPPPIYPRTGSRTE*SQSPHWGEPT---WEPAFSPIQ 559
+ +L PPP+ P T + T + H G+ T +EP P++
Sbjct: 20 IPMQILVQPPPLPPPTATATARHRRTHTGDSTASSYEPQRRPVE 63
>04_01_0098 - 1008936-1011185,1011383-1012271,1012336-1013420
Length = 1407
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 202 CVLPLLSTY*NNVAAPVFWKT 264
C++ LL Y +NV P+ WKT
Sbjct: 1083 CIVKLLMEYASNVQTPIGWKT 1103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,691,860
Number of Sequences: 37544
Number of extensions: 696708
Number of successful extensions: 1640
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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