Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30185
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50089| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.34 
SB_56224| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)                   31   1.1  
SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1)                       29   3.2  
SB_17066| Best HMM Match : PHD (HMM E-Value=1.6)                       29   3.2  
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_18446| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   7.4  
SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 28   7.4  
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)                  28   9.8  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      28   9.8  

>SB_50089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 281 SSKGYDIMNVARMPASKNISWSTIEASGLPKNTSAVVNCAGQQF 412
           SS+GY ++++A  PAS+++S +T      PK     +   G++F
Sbjct: 43  SSRGYPVVSLASQPASQSVSRATPRPHTAPKWRQNTITAQGKKF 86


>SB_56224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 798

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
 Frame = +1

Query: 364 LTKKYFGRCQLCWTTIPFGGGKTPFFLPVRTQVQSWCYEPSNVN*YG*GSPTTGGRFS-- 537
           L K+YF    L    +    GK  F+ P+ +Q     Y  S+ +  G G  T GG  S  
Sbjct: 101 LMKEYFSDDHLV-VAVKTPDGK--FYAPIPSQFLWTTYLSSSSSSSG-GPKTVGGTSSGT 156

Query: 538 SSTGLSCLNGGKSWLPGRFPPVGTL*SFRSGARSRVDGGGMIKNHG 675
           S+ GL+   GG +  P     VG      S A +   GGG +   G
Sbjct: 157 STGGLTTATGGSTGAPSSGAMVGATTWSASSAGASAGGGGGVGTTG 202


>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
          Length = 1052

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 620 NDHKVPTGGN-LPGSQLFPPFKQLRPVEEENLPPVVGLPHPY 498
           N + +PT    LP ++  PP+KQ+ P  ++   P   +PHPY
Sbjct: 645 NRYPIPTNRYPLPKNRYPPPYKQVPPPYKQVPHPYKQVPHPY 686



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 587 PGSQLFPPFKQLRPVEEENLPPVVGLPHPY 498
           P  Q+  P+KQ+ P  ++  PP   +PHPY
Sbjct: 734 PYKQVPHPYKQVPPPYKQVPPPYKQVPHPY 763


>SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1)
          Length = 330

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -1

Query: 534 KSAPSCRTAS--SILIYIGRFIAPTLYLCPDW*KKRGFSPP 418
           +S  SC T S  S  +Y+G      LY C ++ K RG+ PP
Sbjct: 119 ESDSSCSTCSTCSCDMYVGDGDGEELYRCVEYTKHRGYRPP 159


>SB_17066| Best HMM Match : PHD (HMM E-Value=1.6)
          Length = 523

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -1

Query: 534 KSAPSCRTAS--SILIYIGRFIAPTLYLCPDW*KKRGFSPP 418
           +S  SC T S  S  +Y+G      LY C ++ K RG+ PP
Sbjct: 45  ESDSSCSTCSTCSCDMYVGDGDGEELYRCVEYTKHRGYRPP 85


>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 275 LLSSKGYDIMNVARMPASKNISWSTIEASGLPK 373
           L S +GY ++++A  PAS+++S +T      PK
Sbjct: 217 LWSLRGYPVVSLASQPASQSVSRATPRPHSAPK 249


>SB_18446| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 571

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 338 SWSTIEASGLPKNTSAVVNCAGQQFHLGGEKPLFFYQSG 454
           SWS+I    L ++ + VV+  G+ +  GG+  + F Q G
Sbjct: 485 SWSSIPDITLQRSNAGVVHIDGKIYVFGGDDMISFAQQG 523


>SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
 Frame = -1

Query: 723 SQSPRGPPEPQKKGVKTMVLY-HPPPIY-----PRTGSRTE*SQSPHWGEPTWEPAF 571
           SQ P+G P     GV+T  +  +PPP Y     P T      SQ P++G PT +  F
Sbjct: 15  SQPPQGYP-----GVQTYPINNYPPPAYNAQGYPGTPPPAVYSQQPYYGPPTTQQTF 66


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -1

Query: 714 PRGPPEPQKKGVKTMVLYHPPPIYPRTGSRTE*SQSPHWGEPTWEPAF 571
           P G P  +K+ V      HPP  + + G          WG+P   P+F
Sbjct: 394 PEGKPANEKRDVSGPYHQHPPR-HGQDGGHPSQQPRSAWGDPPSHPSF 440


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -1

Query: 723 SQSPRGPPEPQKKGVKTMVLYHPPPIYPRTGSRTE*SQ-SPHWGEPTWEPAFSPIQT 556
           SQ+P  PP P     +      PPPI P TG        +P  G P   P  +P  T
Sbjct: 121 SQAPSPPPPPTSPATRAPP--PPPPIAPATGGPPPPPPIAPATGGPPPPPPIAPAAT 175


>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
          Length = 687

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -2

Query: 653 PPSTLERAPERNDHKVPTGGNLPGSQLFPPFKQLRPVEEEN 531
           PP  L R P          G LP     PP++Q RP  E++
Sbjct: 395 PPHELGRPPHEPGRPPHEPGRLPHEPGRPPYEQRRPPHEKS 435


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 684  GVKTMVLYHPPPIYPRTGSRTE*SQSP 604
            G+ T ++  PPP+ P TG++T    SP
Sbjct: 1763 GITTGLVPKPPPLMPITGTKTSQEASP 1789


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -2

Query: 653 PPSTLERAPERNDHKVPTGGNLPGSQLFPPFKQLRPVEEEN 531
           PP  L R P          G LP     PP++Q RP  E++
Sbjct: 161 PPHELGRPPHEPGRPPHEPGRLPHEPGRPPYEQRRPPHEKS 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,048,003
Number of Sequences: 59808
Number of extensions: 705314
Number of successful extensions: 1404
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)