Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30185
(783 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC000989-1|AAH00989.1| 293|Homo sapiens chromosome 14 open read... 45 3e-04
AF226050-1|AAF86950.1| 319|Homo sapiens HCDI protein. 36 0.22
L39059-1|AAA62861.1| 869|Homo sapiens transcription factor SL1 ... 35 0.38
BC028131-1|AAH28131.1| 775|Homo sapiens TATA box binding protei... 35 0.38
AY158985-1|AAN38818.1| 869|Homo sapiens TATA box binding protei... 35 0.38
U64198-1|AAB36675.1| 862|Homo sapiens Il-12 receptor beta2 prot... 33 1.2
BC104774-1|AAI04775.1| 862|Homo sapiens interleukin 12 receptor... 33 1.2
BC104772-1|AAI04773.1| 862|Homo sapiens interleukin 12 receptor... 33 1.2
AY640177-1|AAT45456.1| 862|Homo sapiens interleukin 12 receptor... 33 1.2
AL389925-3|CAH70407.1| 862|Homo sapiens interleukin 12 receptor... 33 1.2
AL358512-1|CAH69960.1| 862|Homo sapiens interleukin 12 receptor... 33 1.2
D42045-1|BAA07646.2| 1044|Homo sapiens KIAA0086 protein. 32 2.0
BC062582-1|AAH62582.1| 1040|Homo sapiens DNA cross-link repair 1... 32 2.0
BC013124-1|AAH13124.1| 1040|Homo sapiens DNA cross-link repair 1... 32 2.0
AY607842-1|AAT09762.1| 1040|Homo sapiens DNA cross-link repair 1... 32 2.0
AL592546-2|CAI12637.1| 1040|Homo sapiens DNA cross-link repair 1... 32 2.0
>BC000989-1|AAH00989.1| 293|Homo sapiens chromosome 14 open reading
frame 124 protein.
Length = 293
Score = 45.2 bits (102), Expect = 3e-04
Identities = 21/52 (40%), Positives = 33/52 (63%)
Frame = +2
Query: 251 FFGKHLGELLSSKGYDIMNVARMPASKNISWSTIEASGLPKNTSAVVNCAGQ 406
F G L +LL+++G+++ V+R P I+W + ASGLP + A VN AG+
Sbjct: 11 FIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLP-SCDAAVNLAGE 61
>AF226050-1|AAF86950.1| 319|Homo sapiens HCDI protein.
Length = 319
Score = 35.5 bits (78), Expect = 0.22
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 239 WRHRFFGKHLGELLSSKGYDIMNVARMPASKNISWSTIEASGLPKNTSAVVNCAGQ 406
WR R + +++ V+R P I+W + ASGLP + A VN AG+
Sbjct: 33 WRDRLHWDSPNPAAECQRHEVTLVSRKPGPGRITWDELAASGLP-SCDAAVNLAGE 87
>L39059-1|AAA62861.1| 869|Homo sapiens transcription factor SL1
protein.
Length = 869
Score = 34.7 bits (76), Expect = 0.38
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 553 SCLNGGKSWLPGRFPPVGTL*SFRSGARSRVDGGGMIKNHGFYPFFLGFRG 705
+C G +W+PGR P G L GA+ R+ ++ G P FLG G
Sbjct: 210 ACTGGALAWVPGRTPQFGQLVYPAGGAQDRLHFQEVVLTPGDNPQFLGKPG 260
>BC028131-1|AAH28131.1| 775|Homo sapiens TATA box binding protein
(TBP)-associated factor, RNA polymerase I, C, 110kDa
protein.
Length = 775
Score = 34.7 bits (76), Expect = 0.38
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 553 SCLNGGKSWLPGRFPPVGTL*SFRSGARSRVDGGGMIKNHGFYPFFLGFRG 705
+C G +W+PGR P G L GA+ R+ ++ G P FLG G
Sbjct: 143 ACTGGALAWVPGRTPQFGQLVYPAGGAQDRLHFQEVVLTPGDNPQFLGKPG 193
>AY158985-1|AAN38818.1| 869|Homo sapiens TATA box binding protein
(TBP)-associated factor, RNA polymerase I, C, 110kDa
protein.
Length = 869
Score = 34.7 bits (76), Expect = 0.38
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 553 SCLNGGKSWLPGRFPPVGTL*SFRSGARSRVDGGGMIKNHGFYPFFLGFRG 705
+C G +W+PGR P G L GA+ R+ ++ G P FLG G
Sbjct: 210 ACTGGALAWVPGRTPQFGQLVYPAGGAQDRLHFQEVVLTPGDNPQFLGKPG 260
>U64198-1|AAB36675.1| 862|Homo sapiens Il-12 receptor beta2
protein.
Length = 862
Score = 33.1 bits (72), Expect = 1.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 610 KSPLGGTYLGASFFPHSNNLGPWRKKICPQL*DCLIHINLHWKVHSTNSVP 458
K+PL G ++ A + L W + CL+H ++WK +NS P
Sbjct: 519 KAPLSGPHINAITEEKGSILISWNSIPVQEQMGCLLHYRIYWKERDSNSQP 569
>BC104774-1|AAI04775.1| 862|Homo sapiens interleukin 12 receptor,
beta 2 protein.
Length = 862
Score = 33.1 bits (72), Expect = 1.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 610 KSPLGGTYLGASFFPHSNNLGPWRKKICPQL*DCLIHINLHWKVHSTNSVP 458
K+PL G ++ A + L W + CL+H ++WK +NS P
Sbjct: 519 KAPLSGPHINAITEEKGSILISWNSIPVQEQMGCLLHYRIYWKERDSNSQP 569
>BC104772-1|AAI04773.1| 862|Homo sapiens interleukin 12 receptor,
beta 2, precursor protein.
Length = 862
Score = 33.1 bits (72), Expect = 1.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 610 KSPLGGTYLGASFFPHSNNLGPWRKKICPQL*DCLIHINLHWKVHSTNSVP 458
K+PL G ++ A + L W + CL+H ++WK +NS P
Sbjct: 519 KAPLSGPHINAITEEKGSILISWNSIPVQEQMGCLLHYRIYWKERDSNSQP 569
>AY640177-1|AAT45456.1| 862|Homo sapiens interleukin 12 receptor,
beta 2 protein.
Length = 862
Score = 33.1 bits (72), Expect = 1.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 610 KSPLGGTYLGASFFPHSNNLGPWRKKICPQL*DCLIHINLHWKVHSTNSVP 458
K+PL G ++ A + L W + CL+H ++WK +NS P
Sbjct: 519 KAPLSGPHINAITEEKGSILISWNSIPVQEQMGCLLHYRIYWKERDSNSQP 569
>AL389925-3|CAH70407.1| 862|Homo sapiens interleukin 12 receptor,
beta 2 protein.
Length = 862
Score = 33.1 bits (72), Expect = 1.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 610 KSPLGGTYLGASFFPHSNNLGPWRKKICPQL*DCLIHINLHWKVHSTNSVP 458
K+PL G ++ A + L W + CL+H ++WK +NS P
Sbjct: 519 KAPLSGPHINAITEEKGSILISWNSIPVQEQMGCLLHYRIYWKERDSNSQP 569
>AL358512-1|CAH69960.1| 862|Homo sapiens interleukin 12 receptor,
beta 2 protein.
Length = 862
Score = 33.1 bits (72), Expect = 1.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 610 KSPLGGTYLGASFFPHSNNLGPWRKKICPQL*DCLIHINLHWKVHSTNSVP 458
K+PL G ++ A + L W + CL+H ++WK +NS P
Sbjct: 519 KAPLSGPHINAITEEKGSILISWNSIPVQEQMGCLLHYRIYWKERDSNSQP 569
>D42045-1|BAA07646.2| 1044|Homo sapiens KIAA0086 protein.
Length = 1044
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 619 MITKSPLGGTYLGASFFPHSNNLGPWRKKICP 524
+ TKS GG G P S+N+G RKK CP
Sbjct: 675 VFTKSAHGGLQRGNKKIPESSNVGGSRKKTCP 706
>BC062582-1|AAH62582.1| 1040|Homo sapiens DNA cross-link repair 1A
(PSO2 homolog, S. cerevisiae) protein.
Length = 1040
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 619 MITKSPLGGTYLGASFFPHSNNLGPWRKKICP 524
+ TKS GG G P S+N+G RKK CP
Sbjct: 671 VFTKSAHGGLQRGNKKIPESSNVGGSRKKTCP 702
>BC013124-1|AAH13124.1| 1040|Homo sapiens DNA cross-link repair 1A
(PSO2 homolog, S. cerevisiae) protein.
Length = 1040
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 619 MITKSPLGGTYLGASFFPHSNNLGPWRKKICP 524
+ TKS GG G P S+N+G RKK CP
Sbjct: 671 VFTKSAHGGLQRGNKKIPESSNVGGSRKKTCP 702
>AY607842-1|AAT09762.1| 1040|Homo sapiens DNA cross-link repair 1A
(PSO2 homolog, S. cerevisiae) protein.
Length = 1040
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 619 MITKSPLGGTYLGASFFPHSNNLGPWRKKICP 524
+ TKS GG G P S+N+G RKK CP
Sbjct: 671 VFTKSAHGGLQRGNKKIPESSNVGGSRKKTCP 702
>AL592546-2|CAI12637.1| 1040|Homo sapiens DNA cross-link repair 1A
(PSO2 homolog, S. cerevisiae) protein.
Length = 1040
Score = 32.3 bits (70), Expect = 2.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 619 MITKSPLGGTYLGASFFPHSNNLGPWRKKICP 524
+ TKS GG G P S+N+G RKK CP
Sbjct: 671 VFTKSAHGGLQRGNKKIPESSNVGGSRKKTCP 702
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,200,845
Number of Sequences: 237096
Number of extensions: 4097494
Number of successful extensions: 8399
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8353
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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