Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30185
(783 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY069155-1|AAL39300.1| 302|Drosophila melanogaster GH17516p pro... 59 8e-09
AE013599-1571|AAF58468.2| 302|Drosophila melanogaster CG8768-PA... 59 8e-09
AE013599-1862|AAM70997.1| 579|Drosophila melanogaster CG8547-PB... 30 4.1
AE013599-1861|AAF58267.3| 579|Drosophila melanogaster CG8547-PA... 30 4.1
BT010270-1|AAQ23588.1| 1260|Drosophila melanogaster RE21134p pro... 29 5.4
AE014296-3143|AAO41234.1| 1156|Drosophila melanogaster CG32206-P... 29 5.4
AE014296-3142|AAF49168.3| 1260|Drosophila melanogaster CG32206-P... 29 5.4
D90310-1|BAA14340.1| 1505|Drosophila melanogaster DNA polymerase... 29 9.5
AY118728-1|AAM50588.1| 627|Drosophila melanogaster GH03286p pro... 29 9.5
AE014134-2301|AAF53261.1| 627|Drosophila melanogaster CG9426-PA... 29 9.5
AB011813-1|BAA32745.1| 1415|Drosophila melanogaster DNA polymera... 29 9.5
>AY069155-1|AAL39300.1| 302|Drosophila melanogaster GH17516p
protein.
Length = 302
Score = 58.8 bits (136), Expect = 8e-09
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = +2
Query: 251 FFGKHLGELLSSKGYDIMNVARMPASKNISWSTIEASGLPKNTSAVVNCAGQ 406
F G++L L+ KGYD+ ++RMP +K I+W +E +G+P + +AVVN GQ
Sbjct: 18 FIGRNLANHLTKKGYDVTVISRMPGAKRITWHELEKNGIPGSVNAVVNATGQ 69
>AE013599-1571|AAF58468.2| 302|Drosophila melanogaster CG8768-PA
protein.
Length = 302
Score = 58.8 bits (136), Expect = 8e-09
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = +2
Query: 251 FFGKHLGELLSSKGYDIMNVARMPASKNISWSTIEASGLPKNTSAVVNCAGQ 406
F G++L L+ KGYD+ ++RMP +K I+W +E +G+P + +AVVN GQ
Sbjct: 18 FIGRNLANHLTKKGYDVTVISRMPGAKRITWHELEKNGIPGSVNAVVNATGQ 69
>AE013599-1862|AAM70997.1| 579|Drosophila melanogaster CG8547-PB,
isoform B protein.
Length = 579
Score = 29.9 bits (64), Expect = 4.1
Identities = 22/78 (28%), Positives = 31/78 (39%)
Frame = +1
Query: 415 FGGGKTPFFLPVRTQVQSWCYEPSNVN*YG*GSPTTGGRFSSSTGLSCLNGGKSWLPGRF 594
+GG +P P ++ +P N N Y S T ++SS+T + G P F
Sbjct: 386 YGGPHSPPLQPGLPPNNAYPQQPPNGNGYPPNSTTYSYKYSSTTNTNNRRGPDYGSPSPF 445
Query: 595 PPVGTL*SFRSGARSRVD 648
P G S RVD
Sbjct: 446 PVDGVEYPVNSNPPQRVD 463
>AE013599-1861|AAF58267.3| 579|Drosophila melanogaster CG8547-PA,
isoform A protein.
Length = 579
Score = 29.9 bits (64), Expect = 4.1
Identities = 22/78 (28%), Positives = 31/78 (39%)
Frame = +1
Query: 415 FGGGKTPFFLPVRTQVQSWCYEPSNVN*YG*GSPTTGGRFSSSTGLSCLNGGKSWLPGRF 594
+GG +P P ++ +P N N Y S T ++SS+T + G P F
Sbjct: 386 YGGPHSPPLQPGLPPNNAYPQQPPNGNGYPPNSTTYSYKYSSTTNTNNRRGPDYGSPSPF 445
Query: 595 PPVGTL*SFRSGARSRVD 648
P G S RVD
Sbjct: 446 PVDGVEYPVNSNPPQRVD 463
>BT010270-1|AAQ23588.1| 1260|Drosophila melanogaster RE21134p protein.
Length = 1260
Score = 29.5 bits (63), Expect = 5.4
Identities = 24/90 (26%), Positives = 37/90 (41%)
Frame = -1
Query: 588 TWEPAFSPIQTT*ARGGRKSAPSCRTASSILIYIGRFIAPTLYLCPDW*KKRGFSPPKWN 409
TW A+ P+ T + A C T + ++IY GR + P +CP + G P +
Sbjct: 960 TWG-AYLPVDPT-----SEDAMRCHTKNRLMIYSGRPLRPMRVVCP---AQSGPRPMSLH 1010
Query: 408 CCPAQLTTAEVFFGKPEASIVDQDIFFEAG 319
T + F S+V + I E G
Sbjct: 1011 IFSEDWTNGQPLFMNKPISLVLEPILKEPG 1040
>AE014296-3143|AAO41234.1| 1156|Drosophila melanogaster CG32206-PC,
isoform C protein.
Length = 1156
Score = 29.5 bits (63), Expect = 5.4
Identities = 24/90 (26%), Positives = 37/90 (41%)
Frame = -1
Query: 588 TWEPAFSPIQTT*ARGGRKSAPSCRTASSILIYIGRFIAPTLYLCPDW*KKRGFSPPKWN 409
TW A+ P+ T + A C T + ++IY GR + P +CP + G P +
Sbjct: 960 TWG-AYLPVDPT-----SEDAMRCHTKNRLMIYSGRPLRPMRVVCP---AQSGPRPMSLH 1010
Query: 408 CCPAQLTTAEVFFGKPEASIVDQDIFFEAG 319
T + F S+V + I E G
Sbjct: 1011 IFSEDWTNGQPLFMNKPISLVLEPILKEPG 1040
>AE014296-3142|AAF49168.3| 1260|Drosophila melanogaster CG32206-PB,
isoform B protein.
Length = 1260
Score = 29.5 bits (63), Expect = 5.4
Identities = 24/90 (26%), Positives = 37/90 (41%)
Frame = -1
Query: 588 TWEPAFSPIQTT*ARGGRKSAPSCRTASSILIYIGRFIAPTLYLCPDW*KKRGFSPPKWN 409
TW A+ P+ T + A C T + ++IY GR + P +CP + G P +
Sbjct: 960 TWG-AYLPVDPT-----SEDAMRCHTKNRLMIYSGRPLRPMRVVCP---AQSGPRPMSLH 1010
Query: 408 CCPAQLTTAEVFFGKPEASIVDQDIFFEAG 319
T + F S+V + I E G
Sbjct: 1011 IFSEDWTNGQPLFMNKPISLVLEPILKEPG 1040
>D90310-1|BAA14340.1| 1505|Drosophila melanogaster DNA polymerase
alpha protein.
Length = 1505
Score = 28.7 bits (61), Expect = 9.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 248 RFFGKHLGELLSSKGYDIMNVARMPASKNISWSTIEASGLPKNTS 382
RFF +HL L++ KG D+ N ++ N + L NT+
Sbjct: 976 RFFAQHLAALVTHKGRDLTNTQQLVQKMNYDVVYGDTDSLMINTN 1020
>AY118728-1|AAM50588.1| 627|Drosophila melanogaster GH03286p
protein.
Length = 627
Score = 28.7 bits (61), Expect = 9.5
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 281 SSKGYDIMNVARMPASKNISWSTIEASGLPKNTSAVVNCAGQQFHLGGEKP 433
SS DI++ + W+T+ A +P+ AVV G + GG++P
Sbjct: 534 SSISQDILSSVERYSFDEDKWTTVCALNVPRAIPAVVAADGLLYVAGGDQP 584
>AE014134-2301|AAF53261.1| 627|Drosophila melanogaster CG9426-PA
protein.
Length = 627
Score = 28.7 bits (61), Expect = 9.5
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 281 SSKGYDIMNVARMPASKNISWSTIEASGLPKNTSAVVNCAGQQFHLGGEKP 433
SS DI++ + W+T+ A +P+ AVV G + GG++P
Sbjct: 534 SSISQDILSSVERYSFDEDKWTTVCALNVPRAIPAVVAADGLLYVAGGDQP 584
>AB011813-1|BAA32745.1| 1415|Drosophila melanogaster DNA polymerase
alpha 180K subunit protein.
Length = 1415
Score = 28.7 bits (61), Expect = 9.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 248 RFFGKHLGELLSSKGYDIMNVARMPASKNISWSTIEASGLPKNTS 382
RFF +HL L++ KG D+ N ++ N + L NT+
Sbjct: 976 RFFAQHLAALVTHKGRDLTNTQQLVQKMNYDVVYGDTDSLMINTN 1020
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,151,687
Number of Sequences: 53049
Number of extensions: 1146033
Number of successful extensions: 2671
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2663
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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