Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30185
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07150.1 68418.m00815 leucine-rich repeat family protein cont...    30   1.5  
At5g59170.1 68418.m07416 proline-rich family protein contains pr...    29   3.5  
At3g47740.1 68416.m05201 ABC transporter family protein ATP bind...    29   3.5  
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    28   6.1  
At3g47870.1 68416.m05218 LOB domain family protein / lateral org...    28   6.1  
At3g27490.1 68416.m03437 DC1 domain-containing protein contains ...    28   6.1  
At5g23790.1 68418.m02793 galactinol synthase, putative similar t...    28   8.0  
At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protei...    28   8.0  

>At5g07150.1 68418.m00815 leucine-rich repeat family protein
           contains weak similarity to LRR receptor-like protein
           kinase [Nicotiana tabacum] gi|7672732|gb|AAF66615;
           contains Pfam PF00560 domain Leucine Rich Repeat
          Length = 553

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/51 (27%), Positives = 20/51 (39%)
 Frame = -2

Query: 668 FFIIPPPSTLERAPERNDHKVPTGGNLPGSQLFPPFKQLRPVEEENLPPVV 516
           FF  PPP  +  +P      +P    +P     PP  Q  P +   +P  V
Sbjct: 170 FFFAPPPQNIGASPPTETQVIPNPSPVPPPPAQPPPAQTPPPQLSEVPHAV 220


>At5g59170.1 68418.m07416 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 288

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 656 PPPSTLERAPERNDHKVPTGGNLPGSQLFPPFKQLRPVEEENLPPVVGLPHP 501
           PPP  +++ P    +  P     P  Q  PPFK+  P  E+  PP+   P P
Sbjct: 108 PPP--IKKYPPPEQYPPPIKKYPPPEQYSPPFKKY-PPPEQYPPPIKKYPPP 156


>At3g47740.1 68416.m05201 ABC transporter family protein ATP binding
           cassette transporter ABC1, Homo sapiens, PIR2:A54774
          Length = 947

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 312 LVCQP-RKIYPGQQ*RPPAYQKILRPLSIVLDNNSIWGGKNP 434
           +VC   RK+YPG+   PP  +K +R LS+ + +   +G   P
Sbjct: 625 IVCDKLRKVYPGRDGNPP--KKAVRVLSLAVPSGECFGMLGP 664


>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = -2

Query: 662 IIPPPSTLERAPERNDHKVPTGGNLPGSQLFPPFKQLRPVEEENLPPVVGLPHP 501
           +IP P TL   P       PT   +P     PP   L PV   N PP +  P P
Sbjct: 303 LIPTPPTLPTIPLLPTPPTPTLPPIPTIPTLPPLPVLPPVPIVN-PPSLPPPPP 355


>At3g47870.1 68416.m05218 LOB domain family protein / lateral organ
           boundaries domain family protein (LBD27) identical to
           SP|Q9STS6 Putative LOB domain protein 27 {Arabidopsis
           thaliana}; similar to lateral organ boundaries (LOB)
           domain-containing proteins from Arabidopsis thaliana
          Length = 328

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 357 PPAYQKILRPLSIVLDNNSIWGGKNPFFFTSPDTG 461
           PPAY        I+ +NN++WG +N F + + + G
Sbjct: 228 PPAYNTDSGK-EILTNNNNVWGDQNRFLYNNNNGG 261


>At3g27490.1 68416.m03437 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +1

Query: 319 ASLEKYILVNNRGLRLTKKY-FG----RCQLCWTTIPFGGGKTPFFLPVRTQVQSWC 474
           A L + I VN+   R++ KY  G    RC +CW  I +  G  P  L     + S C
Sbjct: 287 AQLPRVIHVNHHDHRISYKYPLGPGEWRCGVCWEEIDWSYGAYPCSLCPNYAIHSLC 343


>At5g23790.1 68418.m02793 galactinol synthase, putative similar to
           galactinol synthase, isoform GolS-1 GI:5608497 from
           [Ajuga reptans]; contains Pfam profile: PF01501 glycosyl
           transferase family 8
          Length = 333

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 106 NLLTYYI*LNLKAIKTPVFFVRASVLSLTRYYCVLPLLSTY*NNVAAPVFWK 261
           NL+TY   L +  I TP +F     L++       P+ STY  N+   + W+
Sbjct: 194 NLVTYEDLLRVVQITTPTYFAEQDFLNIYFRDIYKPIPSTY--NLVMAMLWR 243


>At4g25790.1 68417.m03711 allergen V5/Tpx-1-related family protein
           similar to SP|Q40374 Pathogenesis-related protein PR-1
           precursor {Medicago truncatula}; contains Pfam profile
           PF00188: SCP-like extracellular protein
          Length = 210

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 702 PEPQKKGVKTMVLYHPPPIY-PRTGSRTE*SQSPH 601
           P+P        +LY PPP Y P TGS  +    PH
Sbjct: 48  PQPLPTPSPKPILYQPPPTYQPPTGSFEQQFLDPH 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,102,359
Number of Sequences: 28952
Number of extensions: 529380
Number of successful extensions: 1197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)