Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30184
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 104 1e-23
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 104 1e-23
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 104 1e-23
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 40 5e-04
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 32 0.096
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 0.89
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 27 2.1
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 4.8
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 25 8.3
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 104 bits (250), Expect = 1e-23
Identities = 65/151 (43%), Positives = 88/151 (58%), Gaps = 4/151 (2%)
Frame = -3
Query: 703 RNVSRQELRRGYVAGDSKNNPP*GCCRFYSSSHWGLTILVQNLKRL---HTSIGLPHCPH 533
+NVS +++RRG V GDSKN+PP GC F + I++ + ++ ++ + H H
Sbjct: 311 KNVSVKDIRRGNVCGDSKNDPPMGCASFTAQ-----VIILNHPGQISAGYSPVLDCHTAH 365
Query: 532 -CLQICRNQEKVDRRTGKSTEVTQIHQV*GXNFGXPKGPIVNLVPSKPLCVESFQEFPPL 356
+ EK+DRR+GK E + G I +VPSKP+CVE+F ++ PL
Sbjct: 366 IACKFAELIEKIDRRSGKKIEESPKFVKSGD------ACIAKMVPSKPMCVEAFTDYAPL 419
Query: 355 GRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 263
GRFAVRDMRQTVAVGVIKAV G KVT
Sbjct: 420 GRFAVRDMRQTVAVGVIKAVEKVAPGAAKVT 450
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 104 bits (250), Expect = 1e-23
Identities = 65/151 (43%), Positives = 88/151 (58%), Gaps = 4/151 (2%)
Frame = -3
Query: 703 RNVSRQELRRGYVAGDSKNNPP*GCCRFYSSSHWGLTILVQNLKRL---HTSIGLPHCPH 533
+NVS +++RRG V GDSKN+PP GC F + I++ + ++ ++ + H H
Sbjct: 311 KNVSVKDIRRGNVCGDSKNDPPMGCASFTAQ-----VIILNHPGQISAGYSPVLDCHTAH 365
Query: 532 -CLQICRNQEKVDRRTGKSTEVTQIHQV*GXNFGXPKGPIVNLVPSKPLCVESFQEFPPL 356
+ EK+DRR+GK E + G I +VPSKP+CVE+F ++ PL
Sbjct: 366 IACKFAELIEKIDRRSGKKIEESPKFVKSGD------ACIAKMVPSKPMCVEAFTDYAPL 419
Query: 355 GRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 263
GRFAVRDMRQTVAVGVIKAV G KVT
Sbjct: 420 GRFAVRDMRQTVAVGVIKAVEKVAPGAAKVT 450
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 104 bits (250), Expect = 1e-23
Identities = 65/151 (43%), Positives = 88/151 (58%), Gaps = 4/151 (2%)
Frame = -3
Query: 703 RNVSRQELRRGYVAGDSKNNPP*GCCRFYSSSHWGLTILVQNLKRL---HTSIGLPHCPH 533
+NVS +++RRG V GDSKN+PP GC F + I++ + ++ ++ + H H
Sbjct: 311 KNVSVKDIRRGNVCGDSKNDPPMGCASFTAQ-----VIILNHPGQISAGYSPVLDCHTAH 365
Query: 532 -CLQICRNQEKVDRRTGKSTEVTQIHQV*GXNFGXPKGPIVNLVPSKPLCVESFQEFPPL 356
+ EK+DRR+GK E + G I +VPSKP+CVE+F ++ PL
Sbjct: 366 IACKFAELIEKIDRRSGKKIEESPKFVKSGD------ACIAKMVPSKPMCVEAFTDYAPL 419
Query: 355 GRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 263
GRFAVRDMRQTVAVGVIKAV G KVT
Sbjct: 420 GRFAVRDMRQTVAVGVIKAVEKVAPGAAKVT 450
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = -3
Query: 418 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAVN 293
I L P+C+E F+++ +GRF +RD TVAVG V+K ++
Sbjct: 620 IAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKILD 662
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 31.9 bits (69), Expect = 0.096
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -3
Query: 394 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIK 302
PLC+ +E P LGRF +R TVA G++K
Sbjct: 561 PLCLA--EECPALGRFILRRSGDTVAAGIVK 589
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 0.89
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 506 FLISANLQAMWAVWQSNTGV*PFEILNQDG 595
+L+SA+ W +W +TGV E+L Q+G
Sbjct: 279 YLVSASFDTTWRLWDVHTGV---ELLMQEG 305
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = -3
Query: 709 T*RNVSRQELRRGYVAGDSKNNPP*GCCRFYSSSHWGLTILVQNLKRLHTSIGLPHCPHC 530
T R ++RQ L + + +N+P R SS H LV K +S +P H
Sbjct: 2 TTRRLTRQHLLANTLGNNDENHPSNHIARAKSSLHSSENSLVNGKKATVSSTNVPKKRHA 61
Query: 529 LQICRN 512
L N
Sbjct: 62 LDDVSN 67
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -2
Query: 443 KFWGPQGPHCQLGTFQASMCRVLPGIPTPRSFC 345
+FW P PH QL T Q V+ +P C
Sbjct: 537 QFWSPDSPHSQL-TLQGHNNSVISVAVSPNGHC 568
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.4 bits (53), Expect = 8.3
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -3
Query: 634 GCCRFYSSSHWGLTILVQNLKRLHTSIGLPHCPHCLQICRNQEKVDRRTGKSTEVTQIHQ 455
GC FY S L ILV + L + GL + P + EK+D R T+V + +
Sbjct: 393 GCRTFYHISLSHLQILVLSRNHLTSLSGLENVP-------SLEKLDIRDNSITDVVEFRR 445
Query: 454 V*G 446
+ G
Sbjct: 446 LVG 448
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,131
Number of Sequences: 5004
Number of extensions: 61521
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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