Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30184
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 91 6e-19
03_01_0547 + 4093196-4093657,4094267-4095148 91 6e-19
03_01_0544 + 4082528-4082989,4083585-4084466 91 6e-19
03_01_0543 + 4076981-4077442,4078145-4079026 91 6e-19
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 35 0.076
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 33 0.23
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 33 0.23
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 31 0.93
09_04_0047 - 14139706-14140140,14140234-14140636,14141028-141412... 31 1.2
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 5.0
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 28 8.7
03_02_0378 - 7915514-7915900 28 8.7
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 91.5 bits (217), Expect = 6e-19
Identities = 59/152 (38%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Frame = -3
Query: 703 RNVSRQELRRGYVAGDSKNNPP*GCCRFYSSSHWGLTILVQN----LKRLHTSIGLPHCP 536
+NV+ ++L+RGYVA +SK++P F S +++ N + + + H
Sbjct: 301 KNVAVKDLKRGYVASNSKDDPAKEAASFTSQ------VIIMNHPGQIGNGYAPVLDCHTS 354
Query: 535 H-CLQICRNQEKVDRRTGKSTEVTQIHQV*GXNFGXPKGPIVNLVPSKPLCVESFQEFPP 359
H ++ K+DRR+GK E G +V ++P+KP+ VE+F E+PP
Sbjct: 355 HIAVKFAELVTKIDRRSGKELEKEPKFLKNGD------AGMVKMIPTKPMVVETFSEYPP 408
Query: 358 LGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 263
LGRFAVRDMRQTVAVGVIK V K+ G KVT
Sbjct: 409 LGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 91.5 bits (217), Expect = 6e-19
Identities = 59/152 (38%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Frame = -3
Query: 703 RNVSRQELRRGYVAGDSKNNPP*GCCRFYSSSHWGLTILVQN----LKRLHTSIGLPHCP 536
+NV+ ++L+RGYVA +SK++P F S +++ N + + + H
Sbjct: 301 KNVAVKDLKRGYVASNSKDDPAKEAASFTSQ------VIIMNHPGQIGNGYAPVLDCHTS 354
Query: 535 H-CLQICRNQEKVDRRTGKSTEVTQIHQV*GXNFGXPKGPIVNLVPSKPLCVESFQEFPP 359
H ++ K+DRR+GK E G +V ++P+KP+ VE+F E+PP
Sbjct: 355 HIAVKFAELVTKIDRRSGKELEKEPKFLKNGD------AGMVKMIPTKPMVVETFSEYPP 408
Query: 358 LGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 263
LGRFAVRDMRQTVAVGVIK V K+ G KVT
Sbjct: 409 LGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 91.5 bits (217), Expect = 6e-19
Identities = 59/152 (38%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Frame = -3
Query: 703 RNVSRQELRRGYVAGDSKNNPP*GCCRFYSSSHWGLTILVQN----LKRLHTSIGLPHCP 536
+NV+ ++L+RGYVA +SK++P F S +++ N + + + H
Sbjct: 301 KNVAVKDLKRGYVASNSKDDPAKEAASFTSQ------VIIMNHPGQIGNGYAPVLDCHTS 354
Query: 535 H-CLQICRNQEKVDRRTGKSTEVTQIHQV*GXNFGXPKGPIVNLVPSKPLCVESFQEFPP 359
H ++ K+DRR+GK E G +V ++P+KP+ VE+F E+PP
Sbjct: 355 HIAVKFAELVTKIDRRSGKELEKEPKFLKNGD------AGMVKMIPTKPMVVETFSEYPP 408
Query: 358 LGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 263
LGRFAVRDMRQTVAVGVIK V K+ G KVT
Sbjct: 409 LGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 91.5 bits (217), Expect = 6e-19
Identities = 59/152 (38%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Frame = -3
Query: 703 RNVSRQELRRGYVAGDSKNNPP*GCCRFYSSSHWGLTILVQN----LKRLHTSIGLPHCP 536
+NV+ ++L+RGYVA +SK++P F S +++ N + + + H
Sbjct: 301 KNVAVKDLKRGYVASNSKDDPAKEAASFTSQ------VIIMNHPGQIGNGYAPVLDCHTS 354
Query: 535 H-CLQICRNQEKVDRRTGKSTEVTQIHQV*GXNFGXPKGPIVNLVPSKPLCVESFQEFPP 359
H ++ K+DRR+GK E G +V ++P+KP+ VE+F E+PP
Sbjct: 355 HIAVKFAELVTKIDRRSGKELEKEPKFLKNGD------AGMVKMIPTKPMVVETFSEYPP 408
Query: 358 LGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 263
LGRFAVRDMRQTVAVGVIK V K+ G KVT
Sbjct: 409 LGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVT 440
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 34.7 bits (76), Expect = 0.076
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 418 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 296
++ + K +CVE F LGR +R T+AVG++ V
Sbjct: 610 VIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTIAVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 418 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 305
+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 634 VVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 418 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 305
+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 634 VVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 31.1 bits (67), Expect = 0.93
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -3
Query: 391 LCVESFQEFPPLGRFAVR 338
+C+E+F +FP LGRF +R
Sbjct: 398 ICIENFSDFPQLGRFTLR 415
>09_04_0047 -
14139706-14140140,14140234-14140636,14141028-14141272,
14141341-14141576,14141651-14141939
Length = 535
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 484 YQYDGQLFLDFCK---FAGNVGSVAIQYWCVTV*DFEPGW 594
+ YD QL +D CK FAG+ S + W + + P W
Sbjct: 325 FSYDAQLVIDECKTFFFAGHETSALLLTWAIMLLATNPAW 364
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 87 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 167
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1
Query: 429 PRAPLSTWYLPSLYV*SPSRNSH 361
PR+P S P YV SPSR+SH
Sbjct: 691 PRSPTSRGGRPVYYVQSPSRDSH 713
>03_02_0378 - 7915514-7915900
Length = 128
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -2
Query: 431 PQGPHCQLGTFQASMCRVLPGIPTPRSFCCP 339
P G L + + +L G P P FCCP
Sbjct: 42 PGGVISDLANYTRCITAILFGRPNPEQFCCP 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,385,959
Number of Sequences: 37544
Number of extensions: 411603
Number of successful extensions: 955
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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