Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30184
(726 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 111 6e-25
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.005
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 2.9
SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 29 2.9
SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9) 29 3.8
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 6.7
SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 8.9
SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 8.9
SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 8.9
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 8.9
SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 8.9
SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 8.9
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 111 bits (267), Expect = 6e-25
Identities = 68/151 (45%), Positives = 89/151 (58%), Gaps = 4/151 (2%)
Frame = -3
Query: 703 RNVSRQELRRGYVAGDSKNNPP*GCCRFYSSSHWGLTILVQNLKRLHTSIGLPHCPHCLQ 524
+NVS ++++RG VAGD KNNPP C F + I++ + +H H
Sbjct: 172 KNVSVKDIKRGNVAGDFKNNPPKPCKSFTAQ-----VIVMNHPGEIHAGYSPVLDCHTAH 226
Query: 523 I-CRNQ---EKVDRRTGKSTEVTQIHQV*GXNFGXPKGPIVNLVPSKPLCVESFQEFPPL 356
I C+ EK+DRR+GK E G +V ++PSKP+CVE+F EFPPL
Sbjct: 227 IACKFDKLLEKIDRRSGKKLEDNPKMIKTGD------AAMVEMIPSKPMCVETFTEFPPL 280
Query: 355 GRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 263
GRFAVRDM+QTVAVGVIK+V+ EA GGK T
Sbjct: 281 GRFAVRDMKQTVAVGVIKSVDKTEAAGGKTT 311
>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
Length = 80
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = -3
Query: 415 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 305
V L S+P+CVE ++++ LGRF +R T+A GVI
Sbjct: 42 VELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78
>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 903
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 415 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 326
+++VP++P CV SF EF + +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409
>SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 57 FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNEVSQL 197
+QI+Y+ Y KI +H++ K RK + L FFPS H + +SQL
Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGNISQL 355
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 418 IVNLVPSKPLCVESFQEFPPLGRFAVRD 335
I L +C+E F +F +GRF +RD
Sbjct: 518 IARLETQGVICIEKFSDFQQMGRFTLRD 545
>SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9)
Length = 495
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 294 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 392
LT+L PT L RT +PR G W+ + H+
Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 309 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 404
TP+ VCL+SR + PR W R + G
Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313
>SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
Length = 904
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 415 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 326
++++P++P CV SF EF + +RD+ Q
Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410
>SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11)
Length = 1175
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 415 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 326
+++ P++P CV SF EF + +RD+ Q
Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414
>SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10)
Length = 549
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 415 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 326
+++ P++P CV SF EF + +RD+ Q
Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418
>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 1131
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 415 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 326
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073
>SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 415 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 326
+++ P++P CV SF EF + +RD+ Q
Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561
>SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20)
Length = 1285
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 415 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 326
+++ P++P CV SF EF + +RD+ Q
Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140
>SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29)
Length = 605
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 415 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 326
+++ P++P CV SF EF + +RD+ Q
Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213
>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 415 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 326
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 415 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 326
+++ P++P CV SF EF + +RD+ Q
Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116
>SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 415 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 326
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
>SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 415 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 326
+++ P++P CV SF EF + +RD+ Q
Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,408,322
Number of Sequences: 59808
Number of extensions: 472000
Number of successful extensions: 1186
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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