Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30184
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 98 5e-21
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 98 5e-21
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 98 5e-21
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 41 0.001
Z46787-13|CAA86748.1| 281|Caenorhabditis elegans Hypothetical p... 31 1.1
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 3.4
AY305844-1|AAR11988.1| 423|Caenorhabditis elegans nuclear recep... 28 5.9
AF273828-1|AAG15177.1| 422|Caenorhabditis elegans nuclear recep... 28 5.9
AF273827-1|AAG15176.1| 421|Caenorhabditis elegans nuclear recep... 28 5.9
AF273826-1|AAG15175.1| 419|Caenorhabditis elegans nuclear recep... 28 5.9
AC024771-7|AAK70663.4| 407|Caenorhabditis elegans Nuclear hormo... 28 5.9
AL132847-2|CAB63372.1| 343|Caenorhabditis elegans Hypothetical ... 28 7.8
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 98.3 bits (234), Expect = 5e-21
Identities = 64/152 (42%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Frame = -3
Query: 703 RNVSRQELRRGYVAGDSKNNPP*GCCRFYSSSHWGLTILVQN----LKRLHTSIGLPHCP 536
+NVS +++RRG V DSK +P F++ +++ N + +T + H
Sbjct: 279 KNVSVKDIRRGSVCSDSKQDPAKEARTFHAQ------VIIMNHPGQISNGYTPVLDCHTA 332
Query: 535 H-CLQICRNQEKVDRRTGKSTEVTQIHQV*GXNFGXPKGPIVNLVPSKPLCVESFQEFPP 359
H + +EKVDRRTGK E G IV L+P+KPLCVESF ++ P
Sbjct: 333 HIACKFNELKEKVDRRTGKKVEDFPKFLKSGD------AGIVELIPTKPLCVESFTDYAP 386
Query: 358 LGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 263
LGRFAVRDMRQTVAVGVIK+V + GKVT
Sbjct: 387 LGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVT 418
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 98.3 bits (234), Expect = 5e-21
Identities = 64/152 (42%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Frame = -3
Query: 703 RNVSRQELRRGYVAGDSKNNPP*GCCRFYSSSHWGLTILVQN----LKRLHTSIGLPHCP 536
+NVS +++RRG V DSK +P F++ +++ N + +T + H
Sbjct: 313 KNVSVKDIRRGSVCSDSKQDPAKEARTFHAQ------VIIMNHPGQISNGYTPVLDCHTA 366
Query: 535 H-CLQICRNQEKVDRRTGKSTEVTQIHQV*GXNFGXPKGPIVNLVPSKPLCVESFQEFPP 359
H + +EKVDRRTGK E G IV L+P+KPLCVESF ++ P
Sbjct: 367 HIACKFNELKEKVDRRTGKKVEDFPKFLKSGD------AGIVELIPTKPLCVESFTDYAP 420
Query: 358 LGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 263
LGRFAVRDMRQTVAVGVIK+V + GKVT
Sbjct: 421 LGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVT 452
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 98.3 bits (234), Expect = 5e-21
Identities = 64/152 (42%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Frame = -3
Query: 703 RNVSRQELRRGYVAGDSKNNPP*GCCRFYSSSHWGLTILVQN----LKRLHTSIGLPHCP 536
+NVS +++RRG V DSK +P F++ +++ N + +T + H
Sbjct: 313 KNVSVKDIRRGSVCSDSKQDPAKEARTFHAQ------VIIMNHPGQISNGYTPVLDCHTA 366
Query: 535 H-CLQICRNQEKVDRRTGKSTEVTQIHQV*GXNFGXPKGPIVNLVPSKPLCVESFQEFPP 359
H + +EKVDRRTGK E G IV L+P+KPLCVESF ++ P
Sbjct: 367 HIACKFNELKEKVDRRTGKKVEDFPKFLKSGD------AGIVELIPTKPLCVESFTDYAP 420
Query: 358 LGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 263
LGRFAVRDMRQTVAVGVIK+V + GKVT
Sbjct: 421 LGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVT 452
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = -3
Query: 418 IVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 296
I+ L +P +E F+E+P LGRF +RD +T+A+G V+K V
Sbjct: 490 IMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531
>Z46787-13|CAA86748.1| 281|Caenorhabditis elegans Hypothetical
protein C16C10.10 protein.
Length = 281
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 619 YSSSHWGLTILVQNLKRLHTSIGLPHCPHCLQICRNQEKVDRRTG 485
Y + G+ I+ + R+ S G C L+I ++Q+K+DR+TG
Sbjct: 149 YWNETLGMPIVEEKSSRIRMSYGDGQCE--LEIVKSQDKIDRKTG 191
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -1
Query: 156 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 49
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>AY305844-1|AAR11988.1| 423|Caenorhabditis elegans nuclear receptor
NHR-86 protein.
Length = 423
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 719 VGXHVKERVPSGIASWLCCW*LQKQPTLRVLQILQL 612
+G VK+RV +A +L C ++P+LRV +L L
Sbjct: 349 IGKSVKDRVMKELAFYLRCAKRLEEPSLRVASLLTL 384
>AF273828-1|AAG15177.1| 422|Caenorhabditis elegans nuclear receptor
NHR-86 protein.
Length = 422
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 719 VGXHVKERVPSGIASWLCCW*LQKQPTLRVLQILQL 612
+G VK+RV +A +L C ++P+LRV +L L
Sbjct: 348 IGKSVKDRVMKELAFYLRCAKRLEEPSLRVASLLTL 383
>AF273827-1|AAG15176.1| 421|Caenorhabditis elegans nuclear receptor
NHR-86 protein.
Length = 421
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 719 VGXHVKERVPSGIASWLCCW*LQKQPTLRVLQILQL 612
+G VK+RV +A +L C ++P+LRV +L L
Sbjct: 347 IGKSVKDRVMKELAFYLRCAKRLEEPSLRVASLLTL 382
>AF273826-1|AAG15175.1| 419|Caenorhabditis elegans nuclear receptor
NHR-86 protein.
Length = 419
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 719 VGXHVKERVPSGIASWLCCW*LQKQPTLRVLQILQL 612
+G VK+RV +A +L C ++P+LRV +L L
Sbjct: 345 IGKSVKDRVMKELAFYLRCAKRLEEPSLRVASLLTL 380
>AC024771-7|AAK70663.4| 407|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 86 protein.
Length = 407
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 719 VGXHVKERVPSGIASWLCCW*LQKQPTLRVLQILQL 612
+G VK+RV +A +L C ++P+LRV +L L
Sbjct: 333 IGKSVKDRVMKELAFYLRCAKRLEEPSLRVASLLTL 368
>AL132847-2|CAB63372.1| 343|Caenorhabditis elegans Hypothetical
protein Y48G10A.3 protein.
Length = 343
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -1
Query: 708 RKGTCPVRNCVVVMLLVTPKTTHLKGAADFTAQVIGA*PSWFKISNGYTPVLD 550
R GT V+ V V+ LV + H++ + ++ A W KIS+ VLD
Sbjct: 241 RDGTTGVQLKVPVLQLVGAGSAHVEDTVEVNTKLDPAHADWIKISDSCGLVLD 293
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,626,347
Number of Sequences: 27780
Number of extensions: 363961
Number of successful extensions: 847
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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